Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QOT07_RS24255 Genome accession   NZ_OX461105
Coordinates   5216058..5217581 (+) Length   507 a.a.
NCBI ID   WP_207980117.1    Uniprot ID   A0A7U0RNT7
Organism   Serratia proteamaculans strain EBP3064 isolate EBP3064     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5211058..5222581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT07_RS24230 - 5211261..5212187 (-) 927 WP_099065445.1 branched-chain amino acid transaminase -
  QOT07_RS24235 ilvM 5212209..5212466 (-) 258 WP_012147433.1 acetolactate synthase 2 small subunit -
  QOT07_RS24240 ilvG 5212463..5214109 (-) 1647 WP_207980118.1 acetolactate synthase 2 catalytic subunit -
  QOT07_RS24245 ilvL 5214252..5214350 (-) 99 WP_015962288.1 ilv operon leader peptide -
  QOT07_RS24250 - 5214484..5215716 (-) 1233 WP_283604104.1 MFS transporter -
  QOT07_RS24255 comM 5216058..5217581 (+) 1524 WP_207980117.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QOT07_RS24260 - 5217609..5217947 (-) 339 WP_085119975.1 DUF413 domain-containing protein -
  QOT07_RS24265 hdfR 5218067..5218894 (+) 828 WP_099065463.1 HTH-type transcriptional regulator HdfR -
  QOT07_RS24270 yjfF 5218899..5219891 (-) 993 WP_207980116.1 galactofuranose ABC transporter, permease protein YjfF -
  QOT07_RS24275 ytfT 5219888..5220889 (-) 1002 WP_198404506.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  QOT07_RS24280 ytfR 5220907..5222421 (-) 1515 WP_112349210.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54554.88 Da        Isoelectric Point: 7.3519

>NTDB_id=1159805 QOT07_RS24255 WP_207980117.1 5216058..5217581(+) (comM) [Serratia proteamaculans strain EBP3064 isolate EBP3064]
MALAVIYTRATLGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLARYEFLGELALSGALRGVSGAIPAALAALDAGRQLILATANGREVGLITQSETLVAEHL
LEVCAFLLGKGDLPAASAPPATETTQEPADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
REALESIAVASLLHHPAQALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRATAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGVLSKRRIA
GESSAQVRERVLLARERQLERAGKINALLNNHEVERDCALSEADADFLETTLNKLGLSVRAWQRILKVARTLADLAGDRE
IDKRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1159805 QOT07_RS24255 WP_207980117.1 5216058..5217581(+) (comM) [Serratia proteamaculans strain EBP3064 isolate EBP3064]
ATGGCACTGGCGGTTATTTATACCCGAGCCACACTGGGCGTTCAGGCCCCGTCGGTTACGGTGGAAGTGCATATCAGCAA
CGGACTACCCGGCCTGACCATGGTCGGCCTGCCGGAAACCACGGTGAAAGAAGCCCGCGATCGGGTACGCAGCGCCTTGA
TCAATAACGGCTTCACCTTTCCCGCCCGGCGCATCACCGTCAATCTGGCGCCCGCCGATTTACCCAAGGAAGGCGGCCGT
TACGACCTGCCGATTGCTCTGGCGATCCTCGCGGCCTCCGAACAGTTGCCGGCTGATAAGCTGGCGCGTTATGAGTTCCT
GGGAGAGTTGGCGTTATCCGGTGCACTACGGGGAGTCAGTGGCGCGATACCCGCCGCGTTGGCGGCGCTGGATGCGGGCA
GGCAGTTGATTTTGGCTACCGCTAATGGCCGGGAGGTGGGGTTGATTACCCAGAGCGAAACCCTTGTGGCAGAACACCTG
CTGGAGGTGTGTGCCTTTCTGTTAGGCAAGGGCGACTTACCGGCAGCCAGCGCACCGCCGGCAACGGAGACGACGCAGGA
GCCTGCCGATCTGCAAGATATTCTGGGCCAGGAACAGGCGAAACGGGCGCTGGAGATCGCCGCCGCCGGGGGCCACAACC
TGCTGCTGGTCGGCCCACCGGGGACCGGGAAGACCATGCTGGCCAGCCGTTTGAATGGCCTGCTGCCCCCGCTGACCGAC
CGTGAGGCGCTGGAGAGCATCGCCGTCGCCAGCCTGCTGCACCATCCCGCGCAAGCGCTGCCGTGGCGACAGCGGCCGTT
TCGTGCACCGCATCACAGTGCTTCGATGGCCGCGCTGGTTGGTGGCGGCTCACTGCCGCGACCGGGTGAGATTTCCATGG
CGCACAACGGCGTGCTGTTTCTTGATGAGTTACCTGAATTCGAAAGACGGGTGCTGGATGCCCTGCGTGAACCGCTGGAG
TCTGGCGAGATCGTCATTTCACGCGCCACGGCCAAGGTCTGCTTTCCGGCCAGAGTACAGTTGATCGCGGCCATGAACCC
CAGCCCAACCGGGCATTATCAGGGCATGCACAACCGCGCGTCCCCACAACAGGTGCTGCGCTATCTCGGACGGCTTTCAG
GGCCGTTCCTCGATCGCTTCGATTTATCGATTGAGGTGCCGCTGCTGCCACCGGGCGTGCTAAGCAAACGACGCATCGCC
GGCGAAAGTAGCGCACAGGTACGGGAGCGGGTGCTGTTGGCACGTGAAAGGCAGCTCGAACGTGCCGGGAAGATCAATGC
CCTGCTGAATAATCACGAGGTTGAACGGGATTGCGCACTGAGCGAGGCAGATGCGGACTTTCTTGAGACGACGTTAAACA
AATTGGGATTATCGGTTCGCGCCTGGCAACGGATTTTAAAAGTGGCTCGCACACTGGCAGATTTGGCGGGGGATCGGGAG
ATTGATAAGCGCCATTTGAGCGAAGCGCTTGGCTACCGCAGTATGGACCGCCTGTTGCTGCAGCTGCACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U0RNT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.341

100

0.669
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Vibrio cholerae strain A1552

64.542

99.014

0.639
  comM Vibrio campbellii strain DS40M4

63.944

99.014

0.633
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.471

100

0.467

Multiple sequence alignment