Detailed information NTG1158778

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QOS47_RS02460
• Genome accession: NZ_OX460909
• Coordinates: 487714..488820 (+)
• Length: 368 a.a.
• NCBI ID: WP_232606883.1
• Uniprot ID: -
• Organism: Photobacterium phosphoreum strain MIP2473 isolate MIP2473
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 482714..493820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOS47_RS02430	-	483369..483962 (-)	594	WP_045032190.1	XTP/dITP diphosphatase	-
QOS47_RS02435	yggU	484135..484431 (-)	297	WP_065195406.1	DUF167 family protein YggU	-
QOS47_RS02440	-	484428..484985 (-)	558	WP_065193544.1	YggT family protein	-
QOS47_RS02445	proC	484995..485813 (-)	819	WP_107197039.1	pyrroline-5-carboxylate reductase	-
QOS47_RS02450	-	485927..486637 (-)	711	WP_065193542.1	YggS family pyridoxal phosphate-dependent enzyme	-
QOS47_RS02455	pilT	486660..487697 (+)	1038	WP_045032200.1	type IV pilus twitching motility protein PilT	Machinery gene
QOS47_RS02460	pilU	487714..488820 (+)	1107	WP_232606883.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QOS47_RS02465	ruvX	489184..489615 (-)	432	WP_045032203.1	Holliday junction resolvase RuvX	-
QOS47_RS02470	-	489612..490175 (-)	564	WP_045032205.1	YqgE/AlgH family protein	-
QOS47_RS02475	gshB	490296..491246 (-)	951	WP_045037803.1	glutathione synthase	-
QOS47_RS02480	rsmE	491264..491995 (-)	732	WP_045032209.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-
QOS47_RS02485	-	492155..492841 (-)	687	WP_283598059.1	endonuclease	-
QOS47_RS02490	-	492988..493479 (-)	492	WP_065193540.1	SprT family zinc-dependent metalloprotease	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41296.52 Da
• Isoelectric Point: 6.2872

>NTDB_id=1158778 QOS47_RS02460 WP_232606883.1 487714..488820(+) (pilU) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MTLDDILEQMVAKKASDLYITVDSACLLKIDGNLHDVGEILTRSRVDSLFDQAMDANLRQEFISTKEANFALVRNDLRFR
VSAFWQRELPGMVIRRIETQIPQMDDLQLPIDMERLALSKRGLVLIVGATGSGKSTSMAAMTGYRNQHRSGHILTVEDPI
EFVHKHNKCIITQREVGLDTASYEVALKNSLRQAPDMILIGEIRSRETMEYALNFAETGHLCMATLHANNANQALERILH
LVPKERRDQFLFDLSLNLKCILAQQLVADANGVGRHGVYELLLNTPRVADLIRRGELYEIKDVMAKSTEAGMITFDQSLY
ALFKEGKISEQDALHHADSANDLRLMIKVGDPTAKPLNSLSGVILENK

Nucleotide

• Length: 1107 bp

>NTDB_id=1158778 QOS47_RS02460 WP_232606883.1 487714..488820(+) (pilU) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGACCTTAGATGACATCCTTGAGCAGATGGTGGCTAAAAAAGCCTCCGATTTATATATCACGGTTGATTCAGCGTGTTT
ATTAAAAATTGATGGCAATTTGCATGATGTTGGCGAAATACTCACTCGCAGCAGGGTTGATAGTTTGTTTGATCAAGCCA
TGGATGCCAACCTGCGCCAAGAATTTATCAGCACCAAAGAAGCTAACTTTGCGTTAGTGAGAAATGATTTACGATTTCGA
GTTAGTGCGTTTTGGCAACGAGAATTACCAGGGATGGTGATCCGTCGAATTGAAACCCAAATTCCACAAATGGATGATTT
ACAGTTACCGATTGATATGGAGCGGTTGGCATTATCAAAACGCGGTTTAGTGTTAATTGTCGGTGCAACGGGATCGGGTA
AATCAACCTCAATGGCTGCAATGACAGGTTACCGTAATCAGCATCGCAGTGGTCATATTTTAACAGTTGAAGATCCGATT
GAATTTGTCCATAAACATAACAAATGCATTATCACTCAGCGCGAAGTTGGACTGGATACTGCTAGTTATGAAGTGGCGTT
AAAAAACTCCTTACGCCAAGCACCAGACATGATTTTAATCGGTGAAATTCGCAGCCGTGAAACGATGGAATACGCGTTAA
ATTTTGCAGAGACTGGGCATTTATGCATGGCTACTTTACATGCCAATAATGCTAATCAGGCATTAGAGCGTATTTTACAT
TTGGTCCCTAAAGAGCGGCGTGATCAATTTTTATTTGATTTATCTCTCAACCTTAAATGTATTTTAGCGCAGCAGTTAGT
GGCTGATGCTAATGGTGTTGGTCGTCATGGGGTGTATGAATTATTACTGAATACACCACGAGTGGCTGATCTTATTCGTC
GTGGTGAACTGTATGAAATTAAAGATGTGATGGCTAAGTCGACCGAAGCCGGAATGATAACCTTTGACCAATCACTGTAT
GCCTTATTTAAGGAAGGTAAAATCAGTGAACAAGATGCGCTTCATCATGCCGATTCTGCTAACGATTTACGGTTGATGAT
CAAAGTGGGTGATCCAACCGCTAAACCGTTAAATAGTTTATCTGGCGTAATATTAGAAAATAAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Vibrio cholerae strain A1552	71.633	94.837	0.679
pilU	Pseudomonas stutzeri DSM 10701	57.219	100	0.582
pilU	Acinetobacter baylyi ADP1	56.354	98.37	0.554
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.95	91.576	0.375