Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QOS47_RS00115 Genome accession   NZ_OX460909
Coordinates   19102..20634 (-) Length   510 a.a.
NCBI ID   WP_065194504.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 14102..25634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS00085 - 14754..15413 (-) 660 WP_045029718.1 hemolysin III family protein -
  QOS47_RS00090 - 15564..16241 (-) 678 WP_045029720.1 FadR/GntR family transcriptional regulator -
  QOS47_RS00095 - 16585..16785 (+) 201 WP_065194505.1 hypothetical protein -
  QOS47_RS00100 - 16943..17209 (+) 267 WP_045029723.1 YihD family protein -
  QOS47_RS00105 - 17369..18355 (+) 987 WP_283596709.1 serine/threonine protein kinase -
  QOS47_RS00110 - 18438..19037 (+) 600 WP_181314149.1 thiol:disulfide interchange protein DsbA/DsbL -
  QOS47_RS00115 comM 19102..20634 (-) 1533 WP_065194504.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QOS47_RS00120 ilvG 21027..22673 (+) 1647 WP_107199155.1 acetolactate synthase 2 catalytic subunit -
  QOS47_RS00125 ilvM 22676..22930 (+) 255 WP_045029730.1 acetolactate synthase 2 small subunit -
  QOS47_RS00130 - 22942..23877 (+) 936 WP_181314150.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55235.65 Da        Isoelectric Point: 8.7956

>NTDB_id=1158762 QOS47_RS00115 WP_065194504.1 19102..20634(-) (comM) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MTLAIVHSRACVGVEAPPVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIINAQFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDRLAQHEFIGELALSGDLRPVKGALPAALAALKAKRCLIVPDQNGDQVALVAQKQHKSAPTL
LAVCGFLCGQQQLQLHLQPRLTDTSAVVNDDRDMQDIIGQQQGKRALEIAAAGSHNLLLLGPPGTGKTMLASRLRDLLPP
MTHQEAIETAAVASLTQQSLHHGNWLNRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLRE
PLESGQIVISRATAKTTFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSLEIPALPRGTLTTG
GDRGEPSAVIKARVDCARERMLARSGKVNALLSTRELDKYCGLSFKDAEFLENALHQLGLSVRAYHRIIKVARTIADLAE
QDQIQRAHLAEALGYRAMDRLLKQLSCQVI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1158762 QOS47_RS00115 WP_065194504.1 19102..20634(-) (comM) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGACACTTGCGATTGTTCATAGTCGAGCTTGTGTGGGCGTTGAAGCCCCACCAGTAACGGTTGAGGTACATTTAAGTAA
TGGGATGCCAAGTTTTACCTTAGTTGGTTTGCCTGAAACCACCGTAAAAGAGGCTAAAGATCGGGTGCGAAGTGCAATTA
TTAATGCCCAATTTGAATTTCCGTCGCGACGGATCACGGTTAATCTAGCCCCCGCCGATTTACCCAAAGAAGGGGGACGG
TTTGATTTACCGATTGCTCTTGGCATTTTGGCTGCTTCTGGGCAAATTCCCTCTGATCGATTAGCTCAGCATGAGTTTAT
TGGTGAATTAGCATTATCAGGCGATTTACGCCCAGTGAAAGGGGCATTACCTGCGGCTTTAGCGGCATTAAAAGCCAAAC
GGTGTTTAATTGTACCCGATCAAAATGGTGATCAAGTGGCGTTAGTCGCGCAGAAACAGCATAAATCAGCCCCAACGCTA
TTAGCGGTTTGTGGATTTTTATGTGGGCAACAACAATTACAGCTCCATCTTCAACCCCGCTTAACTGACACATCAGCAGT
GGTTAATGATGATCGTGATATGCAAGATATTATTGGTCAGCAACAAGGTAAACGGGCGTTAGAAATTGCCGCCGCGGGCA
GTCATAATTTATTATTACTTGGCCCCCCTGGAACCGGAAAAACCATGTTGGCATCTCGCTTACGGGATCTGTTGCCGCCC
ATGACCCATCAAGAAGCGATTGAAACTGCGGCAGTTGCTTCACTGACTCAGCAATCATTACACCACGGCAATTGGCTTAA
TCGCCCTTTTCGTACTCCGCATCATTCCAGTTCAATGGCAGCTTTGGTGGGCGGTGGTTCGGTGCCGAAACCCGGTGAGA
TTTCTTTGGCACACAATGGATTATTATTTTTAGATGAAATGCCTGAGTTTGAACGTAAGGTATTAGATTCACTGCGTGAG
CCGTTAGAATCTGGACAAATTGTAATCTCACGCGCGACGGCTAAAACTACCTTTCCCGCTCGATTTCAATTGATTGGTGC
TTTAAATCCAAGCCCAACGGGTTACTACGAAGGCAATCAATCGCGGACGAATCCACAGGCAATTTTACGTTATCTAAGCC
GCTTATCGGGGCCATTGTTAGACAGGTTTGATATGTCGTTAGAAATTCCTGCTTTGCCTCGCGGTACACTGACCACTGGC
GGTGATCGCGGTGAACCGAGTGCGGTAATTAAGGCAAGAGTCGATTGTGCTCGCGAACGGATGTTGGCTCGTAGTGGCAA
AGTGAATGCCTTATTGTCGACCCGTGAATTGGATAAATACTGTGGGTTATCGTTTAAAGATGCTGAGTTTTTAGAAAATG
CGTTGCATCAACTTGGATTATCGGTGCGAGCTTATCATCGCATTATTAAAGTGGCGCGTACGATTGCTGATTTAGCCGAG
CAGGATCAGATTCAACGGGCTCATTTAGCGGAAGCGTTAGGATATCGAGCGATGGATAGATTATTGAAACAACTCAGTTG
TCAGGTAATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.275

100

0.763
  comM Vibrio cholerae strain A1552

75.882

100

0.759
  comM Glaesserella parasuis strain SC1401

65.157

99.608

0.649
  comM Haemophilus influenzae Rd KW20

64.833

99.804

0.647
  comM Legionella pneumophila str. Paris

51

98.039

0.5
  comM Legionella pneumophila strain ERS1305867

51

98.039

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.549

100

0.425

Multiple sequence alignment