Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOR56_RS04220 Genome accession   NZ_OX460906
Coordinates   798272..799219 (+) Length   315 a.a.
NCBI ID   WP_000903640.1    Uniprot ID   A0AAD2WXV2
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 793272..804219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS04195 - 793621..794301 (+) 681 WP_000656582.1 VIT family protein -
  QOR56_RS04200 nagB 794452..795153 (+) 702 WP_001263959.1 glucosamine-6-phosphate deaminase -
  QOR56_RS04205 - 795225..796181 (-) 957 WP_000523784.1 glutathione S-transferase family protein -
  QOR56_RS04210 - 796277..796996 (+) 720 WP_001234959.1 pseudouridine synthase -
  QOR56_RS04215 - 797069..798220 (+) 1152 WP_001086195.1 MFS transporter -
  QOR56_RS04220 coiA 798272..799219 (+) 948 WP_000903640.1 competence protein CoiA family protein Machinery gene
  QOR56_RS04225 pepF 799235..801040 (+) 1806 WP_001282893.1 oligoendopeptidase F Regulator
  QOR56_RS04230 - 801235..801861 (+) 627 WP_000736936.1 HAD hydrolase-like protein -
  QOR56_RS04235 - 801935..802642 (+) 708 WP_000250859.1 O-methyltransferase -
  QOR56_RS04240 prsA 802703..803632 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37751.45 Da        Isoelectric Point: 9.6050

>NTDB_id=1158741 QOR56_RS04220 WP_000903640.1 798272..799219(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-265]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFHHENESNEHLQLKAKLYMSLSRENE
TTLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1158741 QOR56_RS04220 WP_000903640.1 798272..799219(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-265]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTCATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTACGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGGTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTGCTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATATCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAGGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment