Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QOR56_RS04225 Genome accession   NZ_OX460906
Coordinates   799235..801040 (+) Length   601 a.a.
NCBI ID   WP_001282893.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 794235..806040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS04200 nagB 794452..795153 (+) 702 WP_001263959.1 glucosamine-6-phosphate deaminase -
  QOR56_RS04205 - 795225..796181 (-) 957 WP_000523784.1 glutathione S-transferase family protein -
  QOR56_RS04210 - 796277..796996 (+) 720 WP_001234959.1 pseudouridine synthase -
  QOR56_RS04215 - 797069..798220 (+) 1152 WP_001086195.1 MFS transporter -
  QOR56_RS04220 coiA 798272..799219 (+) 948 WP_000903640.1 competence protein CoiA family protein Machinery gene
  QOR56_RS04225 pepF 799235..801040 (+) 1806 WP_001282893.1 oligoendopeptidase F Regulator
  QOR56_RS04230 - 801235..801861 (+) 627 WP_000736936.1 HAD hydrolase-like protein -
  QOR56_RS04235 - 801935..802642 (+) 708 WP_000250859.1 O-methyltransferase -
  QOR56_RS04240 prsA 802703..803632 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -
  QOR56_RS04245 - 803874..804359 (+) 486 WP_000190196.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69653.63 Da        Isoelectric Point: 4.6552

>NTDB_id=1158742 QOR56_RS04225 WP_001282893.1 799235..801040(+) (pepF) [Streptococcus agalactiae isolate MRI Z2-265]
MSDNRSHIEEKYQWDLTTVFATDELWETEVVELTQAIDDAKGFSGHLLDSSQSLLEITEVELDLSRRLEKVYVYASMKND
QDTTVAKYQEFQAKATALYAKFSETFSFYEPELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEEELLAGA
SEIFGAAGETFEILDNADMVFPVVKNAKGEEVELTHGNFISLMESSDRTVRKEAYQAMYSTYEQFQHTYAKTLQTNVKSQ
NFKARVHHYQSARQSALSANFIPEEVYETLIKTVNHHLPLLHRYMKLRQKVLGLDDLKMYDVYTPLSQMDMSFTYDEALK
KSEEVLAIFGEAYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKNRFAILNHYLDGFKGTIFRQTQFAEFEHAIHVADQEGQVLTSEY
LNKLYAEFNEKYYGLTKEDNHFIQYEWARIPHFYYNYYVFQYATGFAAANYLAERIVNGNPEDKEAYLNYLKAGNSDYPL
NVIAKAGVDMTSADYLDAAFRVFEERLVELENLVAKGVHND

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1158742 QOR56_RS04225 WP_001282893.1 799235..801040(+) (pepF) [Streptococcus agalactiae isolate MRI Z2-265]
ATGTCAGACAATCGCTCACATATTGAAGAAAAATACCAATGGGATTTAACTACTGTCTTTGCGACTGATGAGTTATGGGA
AACTGAAGTGGTAGAGCTTACTCAAGCCATCGATGACGCAAAGGGTTTTTCAGGTCATCTGTTGGACTCAAGCCAATCTT
TATTGGAGATCACGGAGGTTGAACTAGATTTATCTCGCCGTTTAGAAAAAGTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGACACCACTGTTGCGAAATATCAAGAATTTCAAGCGAAAGCGACAGCGCTCTATGCAAAATTTAGTGAAACATTTTC
GTTTTACGAGCCAGAACTATTGCAACTTTCAGAGTCTGATTACCAGTCATTCCTTTTAGAAATGCCTGACTTGCAAAAAT
ATGATCATTTCTTTGAGAAAATATTTGCAAATAAACCTCATGTCTTATCTCAAAACGAAGAAGAATTGTTAGCTGGTGCT
AGTGAGATTTTTGGAGCAGCTGGTGAGACATTTGAAATCCTTGATAATGCAGATATGGTCTTCCCAGTTGTAAAAAATGC
AAAAGGTGAGGAAGTTGAGCTTACACATGGTAATTTCATTTCCCTTATGGAATCTAGCGATAGGACGGTTCGAAAAGAAG
CATATCAAGCTATGTATAGCACATATGAACAATTCCAGCATACTTACGCTAAAACATTACAAACAAATGTGAAATCTCAA
AATTTTAAAGCTCGTGTGCATCATTATCAATCAGCACGCCAATCAGCTCTATCTGCCAATTTTATTCCAGAAGAGGTCTA
CGAAACTCTAATTAAGACAGTTAATCATCATTTACCGCTCTTACATCGTTATATGAAGTTGCGTCAAAAAGTTCTTGGGC
TAGATGATTTGAAGATGTATGACGTATATACACCCCTTTCTCAAATGGATATGAGTTTTACTTATGATGAAGCTCTAAAA
AAATCAGAGGAGGTTCTGGCTATTTTTGGCGAAGCATATTCTGAACGTGTTCATCGTGCTTTTACTGAACGTTGGATTGA
TGTCCATGTTAACAAAGGAAAGAGGTCGGGCGCTTATTCAGGTGGATCTTATGACACTAATGCTTTCATGCTCCTTAACT
GGCAAGATACTTTAGACAATCTTTATACGCTGGTGCATGAAACTGGACATAGTCTACACTCGACGTTTACTCGTGAAAAT
CAACCCTATGTTTATGGTGATTATTCTATTTTCCTAGCTGAAATTGCATCAACAACAAATGAAAATATATTAACAGAAAC
CCTTTTGAAAGAAGTTAAAGATGATAAAAATCGCTTTGCAATTCTCAATCATTATTTGGACGGTTTCAAAGGAACAATTT
TTAGACAAACACAGTTCGCTGAATTCGAACATGCCATTCATGTAGCTGATCAGGAGGGGCAAGTACTAACTAGCGAATAT
TTAAACAAACTTTACGCTGAGTTTAATGAAAAATATTATGGTTTGACTAAAGAAGATAATCATTTTATTCAATATGAATG
GGCAAGAATTCCACACTTTTACTACAATTATTATGTTTTCCAATATGCAACCGGCTTTGCAGCAGCAAATTATTTAGCAG
AGCGTATTGTAAACGGTAATCCGGAGGATAAAGAGGCCTACCTAAATTACCTTAAAGCTGGTAATTCAGATTACCCTCTA
AACGTCATTGCTAAAGCCGGTGTTGATATGACTAGTGCAGACTATCTGGATGCAGCCTTTAGAGTATTTGAAGAACGTTT
AGTGGAACTTGAAAATCTTGTAGCAAAAGGCGTCCATAATGATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.452

99.667

0.712

Multiple sequence alignment