Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QWJ11_RS00285 Genome accession   NZ_OX458335
Coordinates   58647..60140 (-) Length   497 a.a.
NCBI ID   WP_289245972.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 53647..65140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWJ11_RS00260 (DAPPPG215_00265) - 53844..55241 (+) 1398 WP_007246521.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  QWJ11_RS00265 (DAPPPG215_00270) - 55468..55866 (-) 399 WP_007246522.1 GFA family protein -
  QWJ11_RS00270 (DAPPPG215_00275) - 56166..57473 (+) 1308 WP_005769588.1 CitMHS family transporter -
  QWJ11_RS00275 - 57565..57642 (-) 78 WP_225982986.1 hypothetical protein -
  QWJ11_RS00280 (DAPPPG215_00280) - 57666..58529 (-) 864 WP_007246523.1 type III effector -
  QWJ11_RS00285 (DAPPPG215_00285) comM 58647..60140 (-) 1494 WP_289245972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QWJ11_RS00290 (DAPPPG215_00290) - 60223..60441 (-) 219 Protein_57 SDR family NAD(P)-dependent oxidoreductase -
  QWJ11_RS00295 (DAPPPG215_00295) - 60500..61123 (-) 624 WP_007246525.1 hypothetical protein -
  QWJ11_RS00300 (DAPPPG215_00300) lysA 61311..62549 (-) 1239 WP_007246526.1 diaminopimelate decarboxylase -
  QWJ11_RS00305 (DAPPPG215_00305) - 62551..63426 (-) 876 WP_007246527.1 DMT family transporter -
  QWJ11_RS00310 (DAPPPG215_00310) - 63426..64709 (-) 1284 WP_007246528.1 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53054.94 Da        Isoelectric Point: 8.0876

>NTDB_id=1158483 QWJ11_RS00285 WP_289245972.1 58647..60140(-) (comM) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
MSLAIVHSRAQVGVEAPALTVEAHLTNGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQIPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVGHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQIPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARARQQKRQGCANAFLDLPGLRQYCALSSTDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITRSHLAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1158483 QWJ11_RS00285 WP_289245972.1 58647..60140(-) (comM) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
ATGTCGCTGGCCATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGCTTACTGTTGAAGCGCATCTGACCAA
TGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGCGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGTATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGTGGTCGT
TTTGATCTTGCGATTGCGCTGGGTTTGCTGGCGGCCAGCGGGCAGATCCCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAGCTGGCGTTGTCAGGGGCGATTCGGCCGATTCAGGGGGTGTTGCCTGCCGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGTTGATCATCCCGGCGGTGAATGCCGAGGAGGCTTGCCTGGCGTCCGGGTTGCGGGTGATTGCGGTGAGTCATTTG
CTGGAGCTGGTCGGGCATTTCAACGGGCGCACGGTGATCGCGCCTTATCAGTCCAGCGGCTTGCTGCATCAGCCCAAGCC
TTATCCGGATTTAAGCGAGGTACAGGGCCAGACTGCCGCAAAGCGTGCGCTGGTGATTGCCGCTGCCGGGGCACATAACT
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGTTGCTCGCCAGTCGCCTGCCGGGATTGTTGCCGCCGCTGGATGAG
CACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGCCAGATACCGTTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCGCATCACTCGGCGTCTGGCCCGGCGTTGGTGGGCGGCGGCAGTCGTCCGCAACCTGGCGAGATCACCCTCGCCC
ATCACGGCGTTCTATTTCTTGATGAGCTGCCGGAGTTTGATCGCCGTGTGCTGGAGGTGTTGCGTGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGTGCACGGGATCGCGTGCGCTTTCCGGCGCGGTTTCAGTTAGTGGCGGCGATGAACCCGTG
CCCCTGTGGATATCTCGGTGAGCCGACCGGGCGCTGTCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGGATTGACCTGCACCTGACGGTCGCCCGCGAGGCTACGGCGCTCAACCCTGACCCGACTACC
AGCGAAAACACCGCCAGCGCTGCCGCAGTGGTTGCGCAGGCTCGCGCACGCCAGCAGAAACGTCAGGGCTGCGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGCCAATATTGCGCGCTGTCGAGCACCGACGAACGCTGGCTGGAAACGGCCTGCGAGC
GCCTGACCTTGTCGCTGCGCTCAGCTCATCGGCTGTTGAAAGTGGCGCGCACCCTGGCGGATCTGGAGCAGGTGGACGCG
ATCACTCGCAGCCATCTGGCCGAGGCGTTGCAGTATCGACCTTCGAGTAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

52.8

100

0.531
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment