Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMX71_RS11810 Genome accession   NZ_OX458332
Coordinates   2481347..2482864 (-) Length   505 a.a.
NCBI ID   WP_017366412.1    Uniprot ID   A0AA35V5I5
Organism   Methylococcus capsulatus isolate Mc(Nor)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2476347..2487864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX71_RS11775 (MCNOR_2463) - 2476759..2477523 (+) 765 WP_026046092.1 glycine zipper 2TM domain-containing protein -
  QMX71_RS11780 (MCNOR_2464) - 2477513..2478022 (+) 510 WP_154656641.1 hypothetical protein -
  QMX71_RS11785 (MCNOR_2465) - 2478049..2478309 (+) 261 WP_017366414.1 hypothetical protein -
  QMX71_RS11790 - 2478623..2478868 (-) 246 Protein_2315 IS3 family transposase -
  QMX71_RS11805 (MCNOR_2468) rep 2479347..2481350 (-) 2004 WP_017366413.1 DNA helicase Rep -
  QMX71_RS11810 (MCNOR_2469) comM 2481347..2482864 (-) 1518 WP_017366412.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMX71_RS11815 (MCNOR_2470) - 2482873..2483124 (-) 252 WP_017366411.1 accessory factor UbiK family protein -
  QMX71_RS11820 (MCNOR_2471) glnK 2483385..2483723 (+) 339 WP_010961376.1 P-II family nitrogen regulator -
  QMX71_RS11825 (MCNOR_2472) - 2483754..2485196 (+) 1443 WP_017366410.1 ammonium transporter -
  QMX71_RS11830 (MCNOR_2473) trxC 2485541..2485960 (-) 420 WP_017366409.1 thioredoxin TrxC -
  QMX71_RS11835 (MCNOR_2474) - 2485963..2486181 (-) 219 WP_026046091.1 DUF2892 domain-containing protein -
  QMX71_RS11840 (MCNOR_2475) grxC 2486333..2486596 (+) 264 WP_026046090.1 glutaredoxin 3 -
  QMX71_RS11845 (MCNOR_2476) - 2486644..2487726 (+) 1083 WP_017366406.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54172.08 Da        Isoelectric Point: 7.3154

>NTDB_id=1158449 QMX71_RS11810 WP_017366412.1 2481347..2482864(-) (comM) [Methylococcus capsulatus isolate Mc(Nor)]
MALAIVHSRACQGIDAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRSALVTTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQIRTEPLLALECVGELALTGELRPVPGALPVALQSRRAERSLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAAEPCTETSQASEEFPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMPFDPAVWRRPPYRAPHHTASAPALVGGGSSPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGTITISRATQRLDFPARFQLVAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDIHIDVPRQDPATLMDG
ASPSEETSVQVRSRVTAARERALRRSGQPNALLTPRQIERHCAPDSAGRALLERAMTRLNLSHRAYHRILKLARTIADLD
GSEAITATHIGEAIGYRRLDRAAHR

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1158449 QMX71_RS11810 WP_017366412.1 2481347..2482864(-) (comM) [Methylococcus capsulatus isolate Mc(Nor)]
ATGGCGCTCGCGATCGTCCACAGCCGCGCCTGCCAGGGCATCGACGCACCGGAGGTGACGGTGGAAGTCCACATCGCTCC
GGGGCTGCCCAATCTCACCATCGTGGGACTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGGGTGCGCAGCGCTCTCG
TCACCACCGGCTTCGAGTTTCCCGCCCAACGCATCACCGTCAACCTGGCCCCGGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATACTGGCCGCTTCCAAGCAGATCCGTACCGAGCCTCTGCTGGCGCTGGAGTGTGT
CGGCGAGCTGGCGCTTACCGGTGAACTGCGTCCGGTCCCCGGAGCCTTGCCCGTCGCCCTCCAGTCGCGCCGTGCCGAGC
GCAGCCTGATCGTACCCTGGGACAATGCCGGCGAAGCGGCGCTGGTCTCCGGCGCCTGCGTGCTCCCGGCGCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCGCTCGCCGCCGCCGAACCGTGCACCGAAACGTCTCAGGCAAGCGA
GGAATTCCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGGCCGCCGGGCACCGGTAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCATTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGGATGCCCTTCGACCCGGCAGTCTGGCGCCGACCGCC
GTACCGCGCCCCTCATCACACTGCCTCCGCACCGGCGCTGGTAGGCGGCGGGAGCAGTCCCAAACCCGGGGAGATTTCGC
TGGCCCATAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGGCGGGTGCTGGAGGTCCTGCGCGAACCCCTG
GAGAGCGGCACCATCACCATTTCCCGCGCCACCCAACGGCTGGATTTCCCCGCCCGTTTCCAGCTCGTCGCCGCGATGAA
TCCCTGCCCCTGCGGCTATCTGGGCGATGCCTCCGGGCGCTGCCATTGCTCGGCCGAACAGGTGGCCCGCTACCGTGCAC
GCATCTCCGGACCTCTCCTGGACCGGATCGACATCCACATCGACGTGCCCCGCCAGGACCCGGCCACACTTATGGACGGC
GCGTCCCCGAGCGAGGAGACCAGCGTTCAGGTCCGATCCCGCGTGACTGCCGCCCGCGAGCGGGCGCTCCGCCGCAGCGG
CCAGCCCAACGCACTGCTCACGCCGCGTCAGATCGAGCGCCATTGCGCCCCCGACAGTGCGGGACGCGCCTTGTTGGAAC
GGGCCATGACACGGCTGAATCTGTCGCACCGCGCCTACCATCGCATTTTGAAGCTGGCCCGCACCATCGCCGATCTGGAT
GGCAGCGAGGCAATCACAGCCACCCACATCGGAGAAGCCATCGGCTACCGGCGTCTCGACCGCGCCGCGCACCGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.886

99.208

0.564
  comM Vibrio campbellii strain DS40M4

56.687

99.208

0.562
  comM Haemophilus influenzae Rd KW20

53.937

100

0.543
  comM Glaesserella parasuis strain SC1401

53.438

100

0.539
  comM Legionella pneumophila str. Paris

48.996

98.614

0.483
  comM Legionella pneumophila strain ERS1305867

48.996

98.614

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.473

Multiple sequence alignment