Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KJP47_RS13235 Genome accession   NZ_OX419577
Coordinates   2458074..2458370 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis isolate NRS6120     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2453074..2463370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS13190 (NRS6120_13725) tasA 2453490..2454275 (-) 786 WP_213381649.1 TasA family protein -
  KJP47_RS13195 (NRS6120_13730) sipW 2454340..2454912 (-) 573 WP_213381733.1 signal peptidase I -
  KJP47_RS13200 (NRS6120_13735) tapA 2454896..2455651 (-) 756 WP_213381630.1 amyloid fiber anchoring/assembly protein TapA -
  KJP47_RS13205 (NRS6120_13740) yqzG 2455923..2456249 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  KJP47_RS13210 (NRS6120_13745) spoIIT 2456291..2456470 (-) 180 WP_003230176.1 YqzE family protein -
  KJP47_RS13215 (NRS6120_13750) comGG 2456541..2456915 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  KJP47_RS13220 (NRS6120_13755) comGF 2456916..2457296 (-) 381 WP_213381628.1 competence type IV pilus minor pilin ComGF Machinery gene
  KJP47_RS13225 (NRS6120_13760) comGE 2457322..2457669 (-) 348 WP_213381625.1 competence type IV pilus minor pilin ComGE Machinery gene
  KJP47_RS13230 (NRS6120_13765) comGD 2457653..2458084 (-) 432 WP_213381623.1 competence type IV pilus minor pilin ComGD Machinery gene
  KJP47_RS13235 (NRS6120_13770) comGC 2458074..2458370 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP47_RS13240 (NRS6120_13775) comGB 2458384..2459421 (-) 1038 WP_121590958.1 competence type IV pilus assembly protein ComGB Machinery gene
  KJP47_RS13245 (NRS6120_13780) comGA 2459408..2460478 (-) 1071 WP_213381621.1 competence type IV pilus ATPase ComGA Machinery gene
  KJP47_RS13250 - 2460689..2460835 (-) 147 WP_282248560.1 hypothetical protein -
  KJP47_RS13255 (NRS6120_13785) corA 2460888..2461841 (-) 954 WP_087961337.1 magnesium transporter CorA -
  KJP47_RS13260 (NRS6120_13790) yqhB 2461983..2463310 (+) 1328 Protein_2565 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=1157753 KJP47_RS13235 WP_003230162.1 2458074..2458370(-) (comGC) [Bacillus subtilis isolate NRS6120]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1157753 KJP47_RS13235 WP_003230162.1 2458074..2458370(-) (comGC) [Bacillus subtilis isolate NRS6120]
ATGAATGAAAAAGGATTTACACTTGTTGAAATGTTGATCGTGCTCTTCATTATTTCGATATTGCTTTTAATTACAATACC
GAACGTGACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAAGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTGCAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCGCATTATCATCACTGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment