Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C163_RS25220 Genome accession   NZ_CP007012
Coordinates   5725925..5727415 (+) Length   496 a.a.
NCBI ID   WP_025341077.1    Uniprot ID   A0AAI8AXU3
Organism   Pseudomonas sp. FGI182     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5720925..5732415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS25195 (C163_25620) - 5721601..5722296 (+) 696 WP_025341074.1 HAD family hydrolase -
  C163_RS25200 (C163_25625) sutA 5722528..5722857 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  C163_RS25205 (C163_25630) - 5723287..5724618 (-) 1332 WP_025341075.1 ammonium transporter -
  C163_RS25210 (C163_25635) glnK 5724665..5725003 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C163_RS25215 (C163_25640) - 5725519..5725785 (+) 267 WP_025341076.1 accessory factor UbiK family protein -
  C163_RS25220 (C163_25645) comM 5725925..5727415 (+) 1491 WP_025341077.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C163_RS25225 (C163_25650) - 5727540..5727908 (-) 369 WP_075046733.1 response regulator transcription factor -
  C163_RS25230 (C163_25655) - 5727905..5728897 (-) 993 WP_025341079.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52866.66 Da        Isoelectric Point: 7.9133

>NTDB_id=115705 C163_RS25220 WP_025341077.1 5725925..5727415(+) (comM) [Pseudomonas sp. FGI182]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPMATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNRPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=115705 C163_RS25220 WP_025341077.1 5725925..5727415(+) (comM) [Pseudomonas sp. FGI182]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACTCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTATCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAATGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTATCTGGCAAGTTGCGCCCGGTGCAGGGCGTGCTGCCCGCGGCACTGGCGGCACGCGAAGCAGGGC
GGGCGCTGGTGGTGCCACGGGAGAATGCCGAGGAGGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCGTTACCGCCGTATGCGGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCTGCCAAGCGTGCACTGCTGCTAGCGGCGGCCGGGGCACATAACC
TGCTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCACTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCACCACTCCGCCTCCGGCCCGGCGCTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGACGAGCTGCCGGAATTCGAGCGGCGTGTGCTGGAAGTGTTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTAGGCGACCCCACTGGCCGCTGCCGCTGCAGTACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCGGCCCTGCGGT
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCCGCCATTGTGGCTTGGCCGCGGCGGACCAGGCCTGGCTGGAGGGCGCCTGTGAACGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACCCTGGCGGATCTGGAAGGTAGCCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474

Multiple sequence alignment