Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMX76_RS17775 Genome accession   NZ_OX411212
Coordinates   3701033..3702556 (-) Length   507 a.a.
NCBI ID   WP_005429794.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3696033..3707556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS17750 - 3696345..3697331 (+) 987 WP_282250315.1 serine/threonine protein kinase -
  QMX76_RS17755 - 3697366..3697968 (+) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMX76_RS17760 - 3698040..3698918 (-) 879 WP_005429796.1 acyltransferase -
  QMX76_RS17765 - 3699088..3700044 (+) 957 WP_050920131.1 DUF2860 domain-containing protein -
  QMX76_RS17770 - 3700189..3701022 (+) 834 WP_282250148.1 sensor domain-containing diguanylate cyclase -
  QMX76_RS17775 comM 3701033..3702556 (-) 1524 WP_005429794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMX76_RS17780 ilvG 3703019..3704665 (+) 1647 WP_045371937.1 acetolactate synthase 2 catalytic subunit -
  QMX76_RS17785 ilvM 3704677..3704961 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  QMX76_RS17790 ilvE 3704974..3705912 (+) 939 WP_005429790.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54941.05 Da        Isoelectric Point: 9.0787

>NTDB_id=1156295 QMX76_RS17775 WP_005429794.1 3701033..3702556(-) (comM) [Vibrio campbellii isolate BF5_0283]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1156295 QMX76_RS17775 WP_005429794.1 3701033..3702556(-) (comM) [Vibrio campbellii isolate BF5_0283]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCAGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCGGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCCCTTTCTGGTGGGTTGAGAACGGTAAAAGGCGTGCTGCCAGCTGCGTTGGCTGCGAATAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCCAATGGTGATCAGGCGGCACTTGTTGGCAAAGAGCAGCACAAATCTGCCCAATCTCTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACATCAACTGAACTTGTATCAAACGCCCAAGAAAAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAAGGAAAGCGCGCTTTAGAAATTGCGGCTGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCTAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGATTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGTAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGCATCATTAAAGTTGCGCGTACTATTGCCGATCTGGAGGGTTCACCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCACAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.803

100

0.998
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment