Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMX76_RS01855 Genome accession   NZ_OX411212
Coordinates   398286..398822 (+) Length   178 a.a.
NCBI ID   WP_005432828.1    Uniprot ID   A0A812GP34
Organism   Vibrio campbellii isolate BF5_0283     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 393286..403822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS01840 uvrA 393350..396172 (-) 2823 WP_282250175.1 excinuclease ABC subunit UvrA -
  QMX76_RS01845 galU 396311..397183 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMX76_RS01850 qstR 397348..397992 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  QMX76_RS01855 ssb 398286..398822 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  QMX76_RS01860 - 398997..400322 (+) 1326 WP_282248592.1 site-specific integrase -
  QMX76_RS01865 - 400333..401886 (+) 1554 WP_282248593.1 site-specific integrase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19774.84 Da        Isoelectric Point: 4.9269

>NTDB_id=1156266 QMX76_RS01855 WP_005432828.1 398286..398822(+) (ssb) [Vibrio campbellii isolate BF5_0283]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1156266 QMX76_RS01855 WP_005432828.1 398286..398822(+) (ssb) [Vibrio campbellii isolate BF5_0283]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GP34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.447

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489

Multiple sequence alignment