Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QMX76_RS01850 Genome accession   NZ_OX411212
Coordinates   397348..397992 (-) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 392348..402992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS01840 uvrA 393350..396172 (-) 2823 WP_282250175.1 excinuclease ABC subunit UvrA -
  QMX76_RS01845 galU 396311..397183 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMX76_RS01850 qstR 397348..397992 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  QMX76_RS01855 ssb 398286..398822 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  QMX76_RS01860 - 398997..400322 (+) 1326 WP_282248592.1 site-specific integrase -
  QMX76_RS01865 - 400333..401886 (+) 1554 WP_282248593.1 site-specific integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=1156265 QMX76_RS01850 WP_005432827.1 397348..397992(-) (qstR) [Vibrio campbellii isolate BF5_0283]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1156265 QMX76_RS01850 WP_005432827.1 397348..397992(-) (qstR) [Vibrio campbellii isolate BF5_0283]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTGTTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACAGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACTTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment