Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALT831_RS19895 Genome accession   NZ_OX359241
Coordinates   4538070..4539584 (+) Length   504 a.a.
NCBI ID   WP_049588441.1    Uniprot ID   -
Organism   Alteromonas macleodii isolate Alteromonas macleodii MIT1002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4533070..4544584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALT831_RS19880 (MIT1002_04040) ilvA 4533398..4534951 (-) 1554 WP_014977809.1 threonine ammonia-lyase, biosynthetic -
  ALT831_RS19885 (MIT1002_04041) ilvD 4534951..4536801 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  ALT831_RS19890 (MIT1002_04042) - 4537244..4537861 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  ALT831_RS19895 (MIT1002_04043) comM 4538070..4539584 (+) 1515 WP_049588441.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALT831_RS19900 (MIT1002_04044) ilvY 4539616..4540488 (-) 873 WP_049588440.1 HTH-type transcriptional activator IlvY -
  ALT831_RS19905 (MIT1002_04045) ilvC 4540646..4542124 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  ALT831_RS19910 (MIT1002_04046) - 4542258..4543505 (-) 1248 WP_170826522.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54115.75 Da        Isoelectric Point: 6.2665

>NTDB_id=1155769 ALT831_RS19895 WP_049588441.1 4538070..4539584(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPLVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
QSVYEHLAGNKKLAKGQPFTSRALNSPLSGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEEENTV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1155769 ALT831_RS19895 WP_049588441.1 4538070..4539584(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGTATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGTGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCGGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATCGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCAGTAAACGGGCTAATTCCTTTGGTAATGGCAGCTGCACACGAAGACA
TTGCGCTCGTATACCCAGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACACGCTATCCTGCTTTCGATTTA
CAGTCTGTTTATGAACACCTTGCCGGCAACAAAAAACTTGCTAAAGGCCAACCGTTTACCTCGCGAGCACTTAACAGCCC
CCTTTCAGGGTGGGATGACATTATCGGCCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGCCCTCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCCAACTTTCAACTAGTAGCGGCGATGAATCC
AAGCCCGACAGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGCCCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCTCGGCTACCTGACTACGATCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCGGGTGAGCTTGCCGATATATGTTTGCTAGATGACGCTGATTTGCAGTTTTTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCTGACCTTGAAGAGGAAAACACCGTG
TCGAGAGCACACATTGCAGAAGCATTAGGCTATCGCGCCCTCGATAATCTTATTAAGCAGTTGAGCGCCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.257

100

0.544
  comM Vibrio campbellii strain DS40M4

53.267

100

0.534
  comM Haemophilus influenzae Rd KW20

51.569

100

0.522
  comM Glaesserella parasuis strain SC1401

51.976

100

0.522
  comM Legionella pneumophila str. Paris

46.169

98.413

0.454
  comM Legionella pneumophila strain ERS1305867

46.169

98.413

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.437

Multiple sequence alignment