Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ALT831_RS00940 | Genome accession | NZ_OX359241 |
| Coordinates | 209024..209650 (+) | Length | 208 a.a. |
| NCBI ID | WP_049589078.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii MIT1002 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 204024..214650
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALT831_RS00925 (MIT1002_00188) | - | 204649..205704 (+) | 1056 | WP_049589081.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| ALT831_RS00930 (MIT1002_00189) | galK | 205697..206836 (+) | 1140 | WP_039217399.1 | galactokinase | - |
| ALT831_RS00935 (MIT1002_00190) | - | 207194..208756 (+) | 1563 | WP_049589079.1 | sodium/sugar symporter | - |
| ALT831_RS00940 (MIT1002_00191) | ssb | 209024..209650 (+) | 627 | WP_049589078.1 | single-stranded DNA-binding protein | Machinery gene |
| ALT831_RS00945 (MIT1002_00192) | - | 209860..210813 (+) | 954 | WP_049589077.1 | hypothetical protein | - |
| ALT831_RS00950 (MIT1002_00193) | - | 210993..212279 (+) | 1287 | WP_049589076.1 | dienelactone hydrolase family protein | - |
| ALT831_RS00955 (MIT1002_00194) | - | 212358..214487 (-) | 2130 | WP_049589075.1 | alpha-galactosidase | - |
Sequence
Protein
Download Length: 208 a.a. Molecular weight: 22527.43 Da Isoelectric Point: 4.9658
>NTDB_id=1155756 ALT831_RS00940 WP_049589078.1 209024..209650(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQAP
QQGGGQQGGYNSNQGGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQAP
QQGGGQQGGYNSNQGGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 627 bp
>NTDB_id=1155756 ALT831_RS00940 WP_049589078.1 209024..209650(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTATAACCAAGCGCCA
CAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAAGGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCA
AGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGACTTCGACGATGACATTCCGTTTTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTATAACCAAGCGCCA
CAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAAGGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCA
AGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGACTTCGACGATGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
54.286 |
100 |
0.548 |
| ssb | Vibrio cholerae strain A1552 |
52.582 |
100 |
0.538 |
| ssb | Neisseria meningitidis MC58 |
44.608 |
98.077 |
0.438 |
| ssb | Neisseria gonorrhoeae MS11 |
44.608 |
98.077 |
0.438 |