Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALTBGP6_RS20005 Genome accession   NZ_OX359237
Coordinates   4639711..4641225 (+) Length   504 a.a.
NCBI ID   WP_156079064.1    Uniprot ID   -
Organism   Alteromonas macleodii isolate Alteromonas macleodii EZ55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4634711..4646225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALTBGP6_RS19990 (EZ55_04060) ilvA 4635039..4636592 (-) 1554 WP_014977809.1 threonine ammonia-lyase, biosynthetic -
  ALTBGP6_RS19995 (EZ55_04061) ilvD 4636592..4638442 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  ALTBGP6_RS20000 (EZ55_04062) - 4638885..4639502 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  ALTBGP6_RS20005 (EZ55_04063) comM 4639711..4641225 (+) 1515 WP_156079064.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALTBGP6_RS20010 (EZ55_04064) ilvY 4641246..4642118 (-) 873 WP_156079065.1 HTH-type transcriptional activator IlvY -
  ALTBGP6_RS20015 (EZ55_04065) ilvC 4642276..4643754 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  ALTBGP6_RS20020 (EZ55_04066) - 4643888..4645135 (-) 1248 WP_197044437.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54079.77 Da        Isoelectric Point: 6.5077

>NTDB_id=1155735 ALTBGP6_RS20005 WP_156079064.1 4639711..4641225(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
QSVYEHLAGNKKLAKGQPFTSRALNSPLSGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRKRVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEDEHAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1155735 ALTBGP6_RS20005 WP_156079064.1 4639711..4641225(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGTATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGTGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCGGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATCGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCAGTAAACGGGCTAATTCCTGTGGTAATGGCAGCTGCACACGAAGACA
TTGCGCTCGTATACCCAGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACACGCTATCCTGCTTTCGATTTA
CAGTCTGTTTATGAACACCTTGCCGGCAACAAAAAACTTGCTAAAGGCCAACCGTTTACCTCGCGAGCACTTAACAGCCC
CCTTTCAGGGTGGGATGACATTATCGGCCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGCCCTCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTTTTACGCGAACCGCTAGAA
ACCGGCGATGTGCATTTATCTCGTGCTTCAGGAAGCGCGACATACCCCGCTAACTTTCAATTAGTAGCGGCAATGAACCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGCCCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCTCGGCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGCTACACGCAACGCGAAAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGCAAGCCAAATGGTGC
GCTGCACGCGGGTGAGCTTGCCGATATATGCTTACTTGATGACGCTGATTTGCAGTTTCTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCAGATCTTGAAGATGAGCACGCCGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCGCTAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.257

100

0.544
  comM Vibrio campbellii strain DS40M4

53.069

100

0.532
  comM Glaesserella parasuis strain SC1401

52.174

100

0.524
  comM Haemophilus influenzae Rd KW20

51.373

100

0.52
  comM Legionella pneumophila str. Paris

45.968

98.413

0.452
  comM Legionella pneumophila strain ERS1305867

45.968

98.413

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.437

Multiple sequence alignment