Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   QNH80_RS07005 Genome accession   NZ_OX352996
Coordinates   1453499..1454536 (-) Length   345 a.a.
NCBI ID   WP_255304289.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448499..1459536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS06965 - 1448642..1449193 (-) 552 WP_012775474.1 folate family ECF transporter S component -
  QNH80_RS06970 - 1449507..1450694 (-) 1188 WP_012775473.1 acetate kinase -
  QNH80_RS06975 comYH 1450744..1451697 (-) 954 WP_024406069.1 class I SAM-dependent methyltransferase Machinery gene
  QNH80_RS06980 comGG 1451754..1452164 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  QNH80_RS06985 comGF/cglF 1452142..1452576 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  QNH80_RS06990 comYE 1452563..1452856 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  QNH80_RS06995 comGD 1452828..1453235 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  QNH80_RS07000 comYC 1453216..1453497 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH80_RS07005 comYB 1453499..1454536 (-) 1038 WP_255304289.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNH80_RS07010 comYA 1454448..1455398 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH80_RS07015 - 1455484..1456427 (+) 944 Protein_1374 S66 peptidase family protein -
  QNH80_RS07020 - 1456462..1456827 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38926.89 Da        Isoelectric Point: 9.0934

>NTDB_id=1155631 QNH80_RS07005 WP_255304289.1 1453499..1454536(-) (comYB) [Streptococcus suis isolate 861160_dhsdS]
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLIHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKQELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1155631 QNH80_RS07005 WP_255304289.1 1453499..1454536(-) (comYB) [Streptococcus suis isolate 861160_dhsdS]
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCGGATCCCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTGCTG
GCAGATTTGCGATTTTCAGATGCGGTGGTCACACAGGTGGCTCTAGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAT
TCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTTGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACAGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAGTCGCAGCTTTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCAGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTTTATGCGGCTGAATGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTAATCCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.531

98.841

0.588
  comYB Streptococcus mutans UA159

59.531

98.841

0.588
  comGB/cglB Streptococcus mitis SK321

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae D39

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae R6

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

60.299

97.101

0.586
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493

Multiple sequence alignment