Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OGY80_RS05425 Genome accession   NZ_OX336253
Coordinates   1145317..1145604 (-) Length   95 a.a.
NCBI ID   WP_263337731.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140317..1150604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS05400 - 1140559..1141107 (-) 549 WP_263338678.1 SMI1/KNR4 family protein -
  OGY80_RS11620 - 1141401..1141601 (-) 201 WP_349306309.1 hypothetical protein -
  OGY80_RS05410 - 1141640..1142332 (-) 693 WP_263338681.1 hypothetical protein -
  OGY80_RS05415 uvrB 1142394..1144421 (-) 2028 WP_263338686.1 excinuclease ABC subunit UvrB -
  OGY80_RS05420 comP 1144640..1145134 (-) 495 WP_263338696.1 type IV pilin protein Machinery gene
  OGY80_RS05425 comE 1145317..1145604 (-) 288 WP_263337731.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9759.43 Da        Isoelectric Point: 10.4923

>NTDB_id=1154753 OGY80_RS05425 WP_263337731.1 1145317..1145604(-) (comE) [Neisseria sp. Marseille-Q5346]
MKKFLFGVVAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1154753 OGY80_RS05425 WP_263337731.1 1145317..1145604(-) (comE) [Neisseria sp. Marseille-Q5346]
ATGAAGAAATTTTTATTTGGTGTAGTTGCCGCCGTTTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAATACCGCATC
TTCTGCCGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTAGAATACCGCCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTACTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCGCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

61.616

100

0.642
  comE Neisseria gonorrhoeae MS11

61.616

100

0.642
  comE Neisseria gonorrhoeae MS11

61.616

100

0.642
  comE Neisseria gonorrhoeae MS11

61.616

100

0.642
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

85.263

0.453

Multiple sequence alignment