Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   OGY80_RS05420 Genome accession   NZ_OX336253
Coordinates   1144640..1145134 (-) Length   164 a.a.
NCBI ID   WP_263338696.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139640..1150134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS05395 - 1140262..1140423 (+) 162 WP_263338674.1 hypothetical protein -
  OGY80_RS05400 - 1140559..1141107 (-) 549 WP_263338678.1 SMI1/KNR4 family protein -
  OGY80_RS11620 - 1141401..1141601 (-) 201 WP_349306309.1 hypothetical protein -
  OGY80_RS05410 - 1141640..1142332 (-) 693 WP_263338681.1 hypothetical protein -
  OGY80_RS05415 uvrB 1142394..1144421 (-) 2028 WP_263338686.1 excinuclease ABC subunit UvrB -
  OGY80_RS05420 comP 1144640..1145134 (-) 495 WP_263338696.1 type IV pilin protein Machinery gene
  OGY80_RS05425 comE 1145317..1145604 (-) 288 WP_263337731.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18071.16 Da        Isoelectric Point: 10.1975

>NTDB_id=1154752 OGY80_RS05420 WP_263338696.1 1144640..1145134(-) (comP) [Neisseria sp. Marseille-Q5346]
MYLKAFDGKRNRATVQRGYSLIQLLVVMLLVSILATAALTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFKGNDAECR
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1154752 OGY80_RS05420 WP_263338696.1 1144640..1145134(-) (comP) [Neisseria sp. Marseille-Q5346]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATAGGGCAACTGTGCAGAGGGGGTATTCTTTGATACAGCTGTTGGTGGT
GATGCTGTTGGTTTCGATATTGGCGACGGCGGCATTGACTGCCTATCGGGAATCGGTCCGCTCGGCGAACCTGCGTGCGG
CGCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACACAAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGCATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGTTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGTGAGGAGATATTTAAGGGCAATGATGCGGAGTGTCGG
CCTTTTATGGGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

95.122

100

0.951
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451

Multiple sequence alignment