Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OGY80_RS04755 Genome accession   NZ_OX336253
Coordinates   1005910..1008042 (-) Length   710 a.a.
NCBI ID   WP_263338337.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000910..1013042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS04730 - 1001301..1001867 (+) 567 WP_070829674.1 NADPH-dependent FMN reductase -
  OGY80_RS04735 - 1002013..1002690 (+) 678 WP_263338326.1 response regulator -
  OGY80_RS04740 - 1002720..1004033 (+) 1314 WP_263338330.1 ATP-binding protein -
  OGY80_RS04745 aroB 1004163..1005242 (-) 1080 WP_263338333.1 3-dehydroquinate synthase -
  OGY80_RS04750 - 1005265..1005777 (-) 513 WP_283255491.1 shikimate kinase -
  OGY80_RS04755 pilQ 1005910..1008042 (-) 2133 WP_263338337.1 type IV pilus secretin PilQ Machinery gene
  OGY80_RS04760 pilP 1008063..1008605 (-) 543 WP_049344277.1 pilus assembly protein PilP Machinery gene
  OGY80_RS04765 pilO 1008621..1009292 (-) 672 WP_263338349.1 type 4a pilus biogenesis protein PilO -
  OGY80_RS04770 pilN 1009292..1009915 (-) 624 WP_063068256.1 PilN domain-containing protein Machinery gene
  OGY80_RS04775 pilM 1009920..1011011 (-) 1092 WP_263338354.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78093.25 Da        Isoelectric Point: 9.6985

>NTDB_id=1154749 OGY80_RS04755 WP_263338337.1 1005910..1008042(-) (pilQ) [Neisseria sp. Marseille-Q5346]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFTNTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERVATPSTARAAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKVSSGRFVFEVSPKAANTESGGLNQNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=1154749 OGY80_RS04755 WP_263338337.1 1005910..1008042(-) (pilQ) [Neisseria sp. Marseille-Q5346]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATTATCAAAATCCGTTTCGACAAAGACGTCACTACACCTC
ATGGTTTTGTAACATCTACTCCGGCACGTATCGCATTGGATTTTACCAACACTAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCCGACCCATTGTTGAATCAAATTACTGCGGCGCAAAACAATGACCGCGCACGCGTGGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTGTTTGTAAACGAATCTACTGACCAAACCAATGCGG
CCGTTGCAAATGAACGTGTGGCTACGCCGTCTACTGCGCGTGCTGCTCAGACTTATCAAGCTGTTTCAGCAGCCAATATT
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCTGCCCCGGGTTTCAGCGGACAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTGACATTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACGCCTGTACAAAACGTTACGCTCAAACGTATCGGTAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGTCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
TTTGAATCAAAATGCAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGTGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCCTTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATCATCAA
TATCGCACCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAACTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTCTGCGCTTGGAAGAATACGACAGC
AATAATTCCAATACCCGCAATACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGCTACCAATACGCTGATCGT
GACCGACAACCGCGGTGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTTG
AAGCGCGCATTGTCGAAGCAGAAGATACCTTCTTCCGTAATTTGGGCGTTAAATTCGGTTCCGGTGGTGCGAGCGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGATGTAGGCTA
CCGCACATGGACTTTGGATCCGAACGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTACGTGCGTTCT
CGTCCGGTGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACTATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAAGCTTCTTCCAGTGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACTCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGTACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II and III secretion system protein (Secretin)

(545-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis MC58

60.664

100

0.669
  pilQ Neisseria meningitidis M1080

61.29

100

0.669
  pilQ Neisseria gonorrhoeae strain FA1090

64.315

100

0.668

Multiple sequence alignment