Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OGY80_RS04760 Genome accession   NZ_OX336253
Coordinates   1008063..1008605 (-) Length   180 a.a.
NCBI ID   WP_049344277.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003063..1013605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS04745 aroB 1004163..1005242 (-) 1080 WP_263338333.1 3-dehydroquinate synthase -
  OGY80_RS04750 - 1005265..1005777 (-) 513 WP_283255491.1 shikimate kinase -
  OGY80_RS04755 pilQ 1005910..1008042 (-) 2133 WP_263338337.1 type IV pilus secretin PilQ Machinery gene
  OGY80_RS04760 pilP 1008063..1008605 (-) 543 WP_049344277.1 pilus assembly protein PilP Machinery gene
  OGY80_RS04765 pilO 1008621..1009292 (-) 672 WP_263338349.1 type 4a pilus biogenesis protein PilO -
  OGY80_RS04770 pilN 1009292..1009915 (-) 624 WP_063068256.1 PilN domain-containing protein Machinery gene
  OGY80_RS04775 pilM 1009920..1011011 (-) 1092 WP_263338354.1 type IV pilus assembly protein PilM -
  OGY80_RS04780 - 1011164..1013560 (+) 2397 WP_263338356.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20046.53 Da        Isoelectric Point: 5.3039

>NTDB_id=1154750 OGY80_RS04760 WP_049344277.1 1008063..1008605(-) (pilP) [Neisseria sp. Marseille-Q5346]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYNPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1154750 OGY80_RS04760 WP_049344277.1 1008063..1008605(-) (pilP) [Neisseria sp. Marseille-Q5346]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAGCCGTATAACC
CGCCGAACTTTAAAGGCATGAATGCGTTTGATTCACGCCGTTTGGACACTGCCCCTAAAGGCGGCAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGTGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60

94.444

0.567

Multiple sequence alignment