Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OGY80_RS04770 Genome accession   NZ_OX336253
Coordinates   1009292..1009915 (-) Length   207 a.a.
NCBI ID   WP_063068256.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1004292..1014915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS04750 - 1005265..1005777 (-) 513 WP_283255491.1 shikimate kinase -
  OGY80_RS04755 pilQ 1005910..1008042 (-) 2133 WP_263338337.1 type IV pilus secretin PilQ Machinery gene
  OGY80_RS04760 pilP 1008063..1008605 (-) 543 WP_049344277.1 pilus assembly protein PilP Machinery gene
  OGY80_RS04765 pilO 1008621..1009292 (-) 672 WP_263338349.1 type 4a pilus biogenesis protein PilO -
  OGY80_RS04770 pilN 1009292..1009915 (-) 624 WP_063068256.1 PilN domain-containing protein Machinery gene
  OGY80_RS04775 pilM 1009920..1011011 (-) 1092 WP_263338354.1 type IV pilus assembly protein PilM -
  OGY80_RS04780 - 1011164..1013560 (+) 2397 WP_263338356.1 penicillin-binding protein 1A -
  OGY80_RS04785 - 1013621..1014457 (+) 837 WP_263338358.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23143.41 Da        Isoelectric Point: 4.8316

>NTDB_id=1154751 OGY80_RS04770 WP_063068256.1 1009292..1009915(-) (pilN) [Neisseria sp. Marseille-Q5346]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAIRNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1154751 OGY80_RS04770 WP_063068256.1 1009292..1009915(-) (pilN) [Neisseria sp. Marseille-Q5346]
ATGATCGAATTAACCAGAATCAACCTTCTCCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGTGCTTTTGCAGTGGGTTTAGGCTTGGCGGCCGCTACTTATCTCGGTATTGACAGCGCCATCCGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTTGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACGCTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGCCCGACCAGCTATAAAATCAGCGGTC
ATGCCATCAGCGACAATAAAATTGCCGTTATGATGCGCTCCCTGCCGAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGTATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTAAATACACCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536

Multiple sequence alignment