Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OH548_RS00065 | Genome accession | NZ_OX335302 |
| Coordinates | 13650..14132 (+) | Length | 160 a.a. |
| NCBI ID | WP_053949427.1 | Uniprot ID | - |
| Organism | Apilactobacillus apinorum strain Fhon13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 8650..19132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH548_RS00040 (AAPFHON13_00080) | - | 10115..11398 (+) | 1284 | WP_053949422.1 | MFS transporter | - |
| OH548_RS00045 (AAPFHON13_00090) | - | 11464..11934 (+) | 471 | WP_053949423.1 | hypothetical protein | - |
| OH548_RS00050 (AAPFHON13_00100) | - | 12048..12674 (+) | 627 | WP_053949424.1 | hypothetical protein | - |
| OH548_RS00055 (AAPFHON13_00110) | - | 12750..13136 (+) | 387 | WP_053949425.1 | hypothetical protein | - |
| OH548_RS00060 (AAPFHON13_00120) | rpsF | 13318..13608 (+) | 291 | WP_053949426.1 | 30S ribosomal protein S6 | - |
| OH548_RS00065 (AAPFHON13_00130) | ssb | 13650..14132 (+) | 483 | WP_053949427.1 | single-stranded DNA-binding protein | Machinery gene |
| OH548_RS00070 (AAPFHON13_00140) | rpsR | 14162..14398 (+) | 237 | WP_034530639.1 | 30S ribosomal protein S18 | - |
| OH548_RS00075 (AAPFHON13_00150) | - | 14560..16596 (+) | 2037 | WP_083437108.1 | DHH family phosphoesterase | - |
| OH548_RS00080 (AAPFHON13_00160) | rplI | 16660..17112 (+) | 453 | WP_053949428.1 | 50S ribosomal protein L9 | - |
| OH548_RS00085 (AAPFHON13_00170) | dnaB | 17139..18530 (+) | 1392 | WP_053949429.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17561.00 Da Isoelectric Point: 4.4502
>NTDB_id=1154701 OH548_RS00065 WP_053949427.1 13650..14132(+) (ssb) [Apilactobacillus apinorum strain Fhon13]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGGNNMGNNAPQNNAGNNNPFESQPSNGGNAADPFANSGDQIDISDDDLPF
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGGNNMGNNAPQNNAGNNNPFESQPSNGGNAADPFANSGDQIDISDDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=1154701 OH548_RS00065 WP_053949427.1 13650..14132(+) (ssb) [Apilactobacillus apinorum strain Fhon13]
ATGATTAATCGTACAACTTTAACAGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCTGCCGTTGG
GAACTTTACCTTAGCCGTTGATCGTTCTTTTACGAACCAACAAGGTGAAAGAGAAGCGGATTTTATTAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCACAAGGGTTCTTTGGTTGGAATTGATGGTCGTATTCAAACAAGA
AATTACGAAAATCAACAAGGTCAAAGAGTATATGTTACTGAAGTTGTTGTTGAAAACTTTGCTTTACTAGAACCTCGTTC
AAGTAACCAAGGTGGAAACAACATGGGCAACAATGCTCCTCAAAACAATGCAGGAAATAACAATCCATTTGAATCACAAC
CATCAAACGGTGGGAATGCAGCGGATCCATTCGCTAATTCAGGTGATCAAATTGATATTTCCGATGATGATTTACCATTT
TAA
ATGATTAATCGTACAACTTTAACAGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCTGCCGTTGG
GAACTTTACCTTAGCCGTTGATCGTTCTTTTACGAACCAACAAGGTGAAAGAGAAGCGGATTTTATTAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCACAAGGGTTCTTTGGTTGGAATTGATGGTCGTATTCAAACAAGA
AATTACGAAAATCAACAAGGTCAAAGAGTATATGTTACTGAAGTTGTTGTTGAAAACTTTGCTTTACTAGAACCTCGTTC
AAGTAACCAAGGTGGAAACAACATGGGCAACAATGCTCCTCAAAACAATGCAGGAAATAACAATCCATTTGAATCACAAC
CATCAAACGGTGGGAATGCAGCGGATCCATTCGCTAATTCAGGTGATCAAATTGATATTTCCGATGATGATTTACCATTT
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
66.667 |
100 |
0.713 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.644 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.982 |
70.625 |
0.381 |
| ssb | Glaesserella parasuis strain SC1401 |
32.418 |
100 |
0.369 |
| ssb | Vibrio cholerae strain A1552 |
33.333 |
100 |
0.369 |