Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MIT1002_RS19855 Genome accession   NZ_OX335040
Coordinates   4601006..4602520 (+) Length   504 a.a.
NCBI ID   WP_156079064.1    Uniprot ID   -
Organism   Alteromonas macleodii isolate Alteromonas macleodii 83-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4596006..4607520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIT1002_RS19840 (ALT831_04002) ilvA 4596334..4597887 (-) 1554 WP_014977809.1 threonine ammonia-lyase, biosynthetic -
  MIT1002_RS19845 (ALT831_04003) ilvD 4597887..4599737 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  MIT1002_RS19850 (ALT831_04004) - 4600180..4600797 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  MIT1002_RS19855 (ALT831_04005) comM 4601006..4602520 (+) 1515 WP_156079064.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MIT1002_RS19860 (ALT831_04006) ilvY 4602541..4603413 (-) 873 WP_156079065.1 HTH-type transcriptional activator IlvY -
  MIT1002_RS19865 (ALT831_04007) ilvC 4603571..4605049 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  MIT1002_RS19870 (ALT831_04008) - 4605183..4606430 (-) 1248 WP_170826522.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54079.77 Da        Isoelectric Point: 6.5077

>NTDB_id=1154697 MIT1002_RS19855 WP_156079064.1 4601006..4602520(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
QSVYEHLAGNKKLAKGQPFTSRALNSPLSGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRKRVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEDEHAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1154697 MIT1002_RS19855 WP_156079064.1 4601006..4602520(+) (comM) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTAGTCGGCATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCAGTAAACGGGCTAATTCCTGTGGTAATGGCAGCTGCACACGAAGACA
TTGCGCTCGTATACCCGGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACACGCTATCCTGCTTTCGATTTA
CAGTCTGTTTATGAACACCTTGCCGGCAACAAAAAACTTGCTAAAGGCCAACCGTTTACCTCGCGAGCACTTAACAGCCC
CCTTTCAGGGTGGGATGACATTATCGGCCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGCCCTCCAGGCACAGGCAAAAGTTTACTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAGGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCGACATACCCCGCTAACTTTCAATTAGTAGCGGCAATGAACCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGCCCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCTCGGCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGCTACACGCAACGCGAAAGCGAGTCATTGCAGCTCGTCACAAACAAGGGCTACGGCAAGGCAAGCCAAATGGTGC
GCTGCACGCGGGTGAGCTTGCCGATATATGTCTGCTAGATGACGCTGATTTGCAGTTTCTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCAGATCTTGAAGATGAGCACGCCGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCGCTAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.257

100

0.544
  comM Vibrio campbellii strain DS40M4

53.069

100

0.532
  comM Glaesserella parasuis strain SC1401

52.174

100

0.524
  comM Haemophilus influenzae Rd KW20

51.373

100

0.52
  comM Legionella pneumophila str. Paris

45.968

98.413

0.452
  comM Legionella pneumophila strain ERS1305867

45.968

98.413

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.437

Multiple sequence alignment