Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4J62_RS23410 Genome accession   NZ_OX291528
Coordinates   4864600..4865130 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain SJC1054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4859600..4870130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4J62_RS23380 (SAMEA13201022_04645) - 4859926..4861287 (-) 1362 WP_004936819.1 NCS2 family permease -
  N4J62_RS23385 (SAMEA13201022_04646) - 4861620..4862027 (-) 408 WP_038874298.1 VOC family protein -
  N4J62_RS23390 (SAMEA13201022_04647) - 4862075..4862743 (-) 669 WP_038874300.1 glutathione S-transferase family protein -
  N4J62_RS23395 - 4862740..4863182 (-) 443 Protein_4572 lipocalin-like domain-containing protein -
  N4J62_RS23400 (SAMEA13201022_04650) - 4863379..4863639 (+) 261 WP_038874302.1 YdgH/BhsA/McbA-like domain containing protein -
  N4J62_RS23405 (SAMEA13201022_04651) - 4863787..4864536 (+) 750 WP_038874304.1 3-oxoacyl-ACP reductase family protein -
  N4J62_RS23410 (SAMEA13201022_04652) ssb 4864600..4865130 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N4J62_RS23415 (SAMEA13201022_04653) uvrA 4865408..4868236 (+) 2829 WP_038874306.1 excinuclease ABC subunit UvrA -
  N4J62_RS23420 (SAMEA13201022_04654) - 4868466..4869518 (+) 1053 WP_038874308.1 NAD(P)-dependent alcohol dehydrogenase -
  N4J62_RS23425 (SAMEA13201022_04655) maa 4869550..4870107 (-) 558 WP_038874310.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=1154439 N4J62_RS23410 WP_004936793.1 4864600..4865130(-) (ssb) [Serratia marcescens strain SJC1054]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1154439 N4J62_RS23410 WP_004936793.1 4864600..4865130(-) (ssb) [Serratia marcescens strain SJC1054]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment