Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AD178_RS09920 Genome accession   NZ_OX244288
Coordinates   1920939..1921892 (-) Length   317 a.a.
NCBI ID   WP_000345136.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1915939..1926892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS09890 (SAMEA1463109_01996) - 1916700..1917323 (-) 624 WP_000932644.1 hypothetical protein -
  AD178_RS09895 (SAMEA1463109_01997) jag 1917374..1918360 (-) 987 WP_000260012.1 RNA-binding cell elongation regulator Jag/EloR -
  AD178_RS09900 (SAMEA1463109_01998) - 1918379..1919203 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AD178_RS09905 (SAMEA1463109_01999) rnpA 1919178..1919549 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AD178_RS09910 - 1919566..1919697 (-) 132 WP_000768904.1 hypothetical protein -
  AD178_RS09915 (SAMEA1463109_02000) - 1919698..1920888 (-) 1191 WP_000167757.1 acetate kinase -
  AD178_RS09920 (SAMEA1463109_02001) comYH 1920939..1921892 (-) 954 WP_000345136.1 class I SAM-dependent methyltransferase Machinery gene
  AD178_RS09925 - 1921953..1922547 (-) 595 Protein_1936 methyltransferase domain-containing protein -
  AD178_RS09930 (SAMEA1463109_02004) comGG/cglG 1922684..1923097 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  AD178_RS09935 (SAMEA1463109_02005) comGF/cglF 1923075..1923536 (-) 462 WP_000250525.1 competence type IV pilus minor pilin ComGF Machinery gene
  AD178_RS09940 (SAMEA1463109_02006) comGE/cglE 1923499..1923801 (-) 303 WP_188109891.1 competence type IV pilus minor pilin ComGE Machinery gene
  AD178_RS09945 (SAMEA1463109_02007) comGD/cglD 1923764..1924168 (-) 405 WP_000588022.1 competence type IV pilus minor pilin ComGD Machinery gene
  AD178_RS09950 (SAMEA1463109_02008) comGC/cglC 1924161..1924487 (-) 327 WP_000738634.1 comG operon protein ComGC Machinery gene
  AD178_RS09955 (SAMEA1463109_02009) comGB/cglB 1924489..1925505 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  AD178_RS09960 (SAMEA1463109_02010) comGA/cglA/cilD 1925453..1926394 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  AD178_RS09965 (SAMEA1463109_02011) - 1926470..1926835 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35783.02 Da        Isoelectric Point: 4.2355

>NTDB_id=1154354 AD178_RS09920 WP_000345136.1 1920939..1921892(-) (comYH) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKENNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGAIFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAYHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1154354 AD178_RS09920 WP_000345136.1 1920939..1921892(-) (comYH) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAGGAGAACAATC
AAACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTATTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCTATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment