Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OOL07_RS07010 Genome accession   NZ_OX241534
Coordinates   1419254..1420771 (-) Length   505 a.a.
NCBI ID   WP_264695832.1    Uniprot ID   -
Organism   Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1414254..1425771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL07_RS09235 (NURINAE_01400) - 1414594..1415124 (-) 531 WP_319804029.1 hypothetical protein -
  OOL07_RS07000 (NURINAE_01402) ilvD 1415365..1417215 (-) 1851 WP_264695830.1 dihydroxy-acid dehydratase -
  OOL07_RS07005 (NURINAE_01403) rep 1417264..1419267 (-) 2004 WP_264695831.1 DNA helicase Rep -
  OOL07_RS07010 (NURINAE_01404) comM 1419254..1420771 (-) 1518 WP_264695832.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OOL07_RS07015 (NURINAE_01405) ubiK 1420809..1421093 (-) 285 WP_264695833.1 ubiquinone biosynthesis accessory factor UbiK -
  OOL07_RS07020 (NURINAE_01406) - 1421413..1422498 (+) 1086 WP_264695834.1 porin -
  OOL07_RS07025 (NURINAE_01407) - 1422569..1423720 (-) 1152 WP_264695835.1 hypothetical protein -
  OOL07_RS07030 (NURINAE_01408) - 1423908..1425374 (-) 1467 WP_264695836.1 RimK family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55645.28 Da        Isoelectric Point: 9.4138

>NTDB_id=1154289 OOL07_RS07010 WP_264695832.1 1419254..1420771(-) (comM) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
MPLAVIYSRAQSGIEAPLVTVEVHLSNGLPAFTIVGLPEATVKESRERVRGALLNSRFEFPARRITVNLAPADLPKEGGR
FDLAIALGILSASGQISPLNLTDYEFISELSLDGGLRSVRAVLPTALQTKRAKRILIIAKENLLEARLVSDIKIFSSSNL
LEVCQFLQEQFPLSPLPNLPKVNKNRYTDISDVRGQYQAKRALEIAAAGGHNMLMIGPPGAGKTMLANCLPGILPPMTEQ
EALESATVQSISNQGFNPDRSWQHRTFRAPHHTASATALVGGGGQPKPGEISLAHHGVLFLDELPEFERKVLEVLREPLE
SGKIIISRAAKQVEFPAKFQLIAAMNPCPCGYLGDSNGKCRCTLEQIQRYRAKVSGPLLDRIDIHMEIPSVPLNLLHSKA
EESVEQSIQVQVRVKKARKVQYSRSNKLNCWLNNKEISQVCMLNAQGYSLLEQASERLGFSARAYHRILKVARTIADLEN
SKPIEIPHLSEAIGYRRLDRIYGNA

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1154289 OOL07_RS07010 WP_264695832.1 1419254..1420771(-) (comM) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
ATGCCCTTAGCAGTTATCTATAGTCGTGCTCAATCTGGAATTGAAGCCCCCTTAGTTACAGTAGAAGTACATCTTTCCAA
TGGGCTTCCTGCTTTTACCATTGTAGGATTACCTGAAGCTACGGTAAAAGAAAGTAGAGAGCGAGTTCGAGGAGCATTAC
TCAATTCTCGTTTTGAGTTTCCAGCACGGCGGATTACCGTCAATTTAGCACCTGCCGACCTTCCTAAAGAAGGTGGGCGA
TTTGATTTAGCCATAGCATTAGGTATTTTATCTGCTTCAGGACAAATTTCTCCCTTAAACTTAACGGATTATGAGTTTAT
TAGCGAGCTTTCCTTAGACGGAGGGTTGAGAAGTGTTCGTGCGGTATTGCCTACTGCATTACAAACGAAAAGGGCTAAAC
GAATTCTAATTATAGCTAAAGAAAATCTACTAGAAGCTAGGTTAGTTTCTGATATTAAAATATTTTCTTCCTCTAATTTA
TTAGAAGTATGTCAATTTCTTCAAGAGCAATTCCCTCTTTCTCCGCTACCAAATCTACCTAAAGTTAACAAAAACCGCTA
TACAGATATAAGTGATGTGCGTGGTCAATACCAAGCGAAGCGAGCTTTAGAAATCGCTGCCGCTGGGGGTCATAATATGT
TAATGATTGGTCCACCCGGGGCTGGAAAAACCATGCTAGCTAACTGTCTACCAGGGATTTTGCCTCCAATGACAGAACAA
GAAGCTTTAGAAAGCGCGACCGTGCAATCTATTAGTAACCAGGGTTTTAATCCAGATCGTAGCTGGCAGCATCGAACTTT
TCGTGCACCTCATCACACAGCCTCTGCAACAGCCCTAGTAGGCGGTGGGGGGCAACCCAAACCAGGGGAGATTTCTCTAG
CTCACCATGGGGTATTGTTCTTAGATGAGTTACCTGAATTTGAAAGGAAAGTTTTAGAAGTACTCAGAGAACCTCTAGAA
TCTGGAAAAATTATTATTTCTCGAGCAGCAAAACAAGTAGAATTTCCTGCAAAATTCCAGCTGATTGCAGCAATGAATCC
CTGTCCTTGTGGTTATTTAGGAGATTCTAATGGAAAGTGCCGATGCACTTTAGAGCAAATTCAACGATATCGTGCTAAAG
TTTCAGGCCCCTTATTGGATCGGATTGATATTCACATGGAGATACCTTCAGTACCATTAAATTTATTACACTCTAAAGCA
GAAGAATCTGTAGAGCAAAGCATACAAGTTCAAGTAAGAGTAAAAAAAGCAAGAAAAGTACAATATAGCCGATCAAATAA
ACTTAACTGCTGGCTTAATAACAAAGAAATTAGCCAGGTATGTATGCTTAATGCTCAAGGCTATTCTTTATTAGAACAAG
CCTCAGAACGCTTAGGGTTTTCTGCACGTGCTTATCATCGTATTTTAAAAGTAGCTCGAACTATTGCTGATTTAGAGAAC
AGTAAACCTATTGAGATACCTCATCTCTCAGAGGCAATTGGCTATCGACGCTTGGATCGTATCTATGGAAACGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.299

100

0.566
  comM Vibrio cholerae strain A1552

55.578

99.406

0.552
  comM Vibrio campbellii strain DS40M4

54.672

99.604

0.545
  comM Glaesserella parasuis strain SC1401

53.725

100

0.543
  comM Legionella pneumophila str. Paris

53.507

98.812

0.529
  comM Legionella pneumophila strain ERS1305867

53.507

98.812

0.529
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.693

100

0.475

Multiple sequence alignment