Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   LQ142_RS24590 Genome accession   NZ_OW969904
Coordinates   5031147..5032667 (+) Length   506 a.a.
NCBI ID   WP_071685131.1    Uniprot ID   -
Organism   Citrobacter freundii isolate 0     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 5026147..5037667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ142_RS24570 (AI3057V1_4795) - 5027703..5028632 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  LQ142_RS24575 (AI3057V1_4796) ilvM 5028650..5028913 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  LQ142_RS24580 (AI3057V1_4797) ilvG 5028910..5030556 (-) 1647 WP_003841174.1 acetolactate synthase 2 catalytic subunit -
  LQ142_RS24585 ilvL 5030696..5030794 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQ142_RS24590 (AI3057V1_4798) comM 5031147..5032667 (+) 1521 WP_071685131.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ142_RS24595 (AI3057V1_4799) maoP 5032692..5033030 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  LQ142_RS24600 (AI3057V1_4800) hdfR 5033137..5033982 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence


Protein


Download         Length: 506 a.a.        Molecular weight: 55070.99 Da        Isoelectric Point: 7.2429

>NTDB_id=1153721 LQ142_RS24590 WP_071685131.1 5031147..5032667(+) (comM) [Citrobacter freundii isolate 0]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIQGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLILIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDINKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153721 LQ142_RS24590 WP_071685131.1 5031147..5032667(+) (comM) [Citrobacter freundii isolate 0]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCTGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGGGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACAGGGTGAAGGGTGCCTCATAGCCGATCATCTA
CAGGCAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCAGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCA
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCCATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCAATAAATACTGTCCACTGCGCAGTGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTTGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATAGGGCGATAGACAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579

  comM Glaesserella parasuis strain SC1401

57.677

100

0.579

  comM Vibrio cholerae strain A1552

58.167

99.209

0.577

  comM Haemophilus influenzae Rd KW20

56.751

100

0.573

  comM Legionella pneumophila str. Paris

46.881

98.221

0.46

  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.52

100

0.427


Multiple sequence alignment