Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQV22_RS21840 Genome accession   NZ_OW969691
Coordinates   4605727..4607247 (+) Length   506 a.a.
NCBI ID   WP_230032329.1    Uniprot ID   -
Organism   Citrobacter koseri isolate 0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4600727..4612247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQV22_RS21820 (AN2351V1_4236) ilvE 4602284..4603213 (-) 930 WP_012131120.1 branched-chain-amino-acid transaminase -
  LQV22_RS21825 (AN2351V1_4237) ilvM 4603231..4603494 (-) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  LQV22_RS21830 (AN2351V1_4238) ilvG 4603491..4605137 (-) 1647 WP_115626141.1 acetolactate synthase 2 catalytic subunit -
  LQV22_RS21835 ilvL 4605277..4605375 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQV22_RS21840 (AN2351V1_4239) comM 4605727..4607247 (+) 1521 WP_230032329.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQV22_RS21845 (AN2351V1_4240) maoP 4607274..4607612 (-) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  LQV22_RS21850 (AN2351V1_4241) hdfR 4607719..4608564 (+) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55030.05 Da        Isoelectric Point: 7.4365

>NTDB_id=1153626 LQV22_RS21840 WP_230032329.1 4605727..4607247(+) (comM) [Citrobacter koseri isolate 0]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENTAEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTEQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153626 LQV22_RS21840 WP_230032329.1 4605727..4607247(+) (comM) [Citrobacter koseri isolate 0]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCCCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCAGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATACGGCGGAAGTTGGGCTAATCAGCGGGGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACTTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGCGCGGCGATTCTCAGCCTGGTGAACGCTGATACGGAACAAAGGCAGTGGAAACGACGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTAGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACTCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGGTTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAGACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Haemophilus influenzae Rd KW20

58.398

100

0.591
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

47.2

98.814

0.466
  comM Legionella pneumophila strain ERS1305867

47.2

98.814

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

99.407

0.443

Multiple sequence alignment