Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ131_RS23585 Genome accession   NZ_OW969633
Coordinates   5000512..5002032 (+) Length   506 a.a.
NCBI ID   WP_015368900.1    Uniprot ID   A0AAW9E7P5
Organism   Klebsiella aerogenes isolate 57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4995512..5007032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ131_RS23565 (AI2913V1_4575) - 4997069..4997998 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  LQ131_RS23570 (AI2913V1_4576) ilvM 4998018..4998275 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  LQ131_RS23575 (AI2913V1_4577) ilvG 4998272..4999918 (-) 1647 WP_015368898.1 acetolactate synthase 2 catalytic subunit -
  LQ131_RS23580 ilvL 5000059..5000157 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQ131_RS23585 (AI2913V1_4578) comM 5000512..5002032 (+) 1521 WP_015368900.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ131_RS23590 (AI2913V1_4579) - 5002056..5002394 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  LQ131_RS23595 (AI2913V1_4580) hdfR 5002513..5003334 (+) 822 WP_015703960.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55030.26 Da        Isoelectric Point: 7.3770

>NTDB_id=1153578 LQ131_RS23585 WP_015368900.1 5000512..5002032(+) (comM) [Klebsiella aerogenes isolate 57]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLSKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKHTLQPPTGEITAGEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153578 LQ131_RS23585 WP_015368900.1 5000512..5002032(+) (comM) [Klebsiella aerogenes isolate 57]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCACATCAGCAA
CGGACTACCCGGTTTGACGATGGTCGGTCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGTCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGCCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGGAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTAC
TCTTGATGGGTCCACCGGGTACAGGGAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGCGCTGCTATCCTCAGCCTCGTCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
TGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCTGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTATCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.881

100

0.599
  comM Vibrio campbellii strain DS40M4

59.406

99.802

0.593
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.071

100

0.583
  comM Legionella pneumophila str. Paris

49.598

98.419

0.488
  comM Legionella pneumophila strain ERS1305867

49.598

98.419

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443

Multiple sequence alignment