Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB068_RS09315 Genome accession   NZ_OW969598
Coordinates   1849093..1850589 (+) Length   498 a.a.
NCBI ID   WP_250314759.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1844093..1855589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS09300 putP 1846747..1848273 (-) 1527 WP_002249991.1 sodium/proline symporter PutP -
  NB068_RS09305 - 1848534..1848704 (-) 171 WP_153320926.1 hypothetical protein -
  NB068_RS09310 - 1848759..1849079 (+) 321 WP_002249992.1 accessory factor UbiK family protein -
  NB068_RS09315 comM 1849093..1850589 (+) 1497 WP_250314759.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB068_RS09320 ftsN 1850693..1851559 (+) 867 WP_250314760.1 cell division protein FtsN -
  NB068_RS09325 - 1851562..1852206 (+) 645 WP_250314761.1 thiol:disulfide interchange protein DsbA/DsbL -
  NB068_RS09330 - 1852241..1853062 (+) 822 WP_250314762.1 undecaprenyl-diphosphate phosphatase -
  NB068_RS09335 - 1853297..1853563 (+) 267 WP_101127890.1 hypothetical protein -
  NB068_RS09350 - 1854200..1855348 (-) 1149 WP_250314763.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53751.86 Da        Isoelectric Point: 7.3623

>NTDB_id=1153555 NB068_RS09315 WP_250314759.1 1849093..1850589(+) (comM) [Neisseria sp. Marseille-Q6792]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAPEKLAQYEFAGELALSGMLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGITVYGARSL
GEVAAYLNGIEPLAQTEYQVPQMPSENAKLPDLIDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPIKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSARVLARVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGNLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAVGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1153555 NB068_RS09315 WP_250314759.1 1849093..1850589(+) (comM) [Neisseria sp. Marseille-Q6792]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGCATGAATGCGCCGTTGGTTGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCTCATTTCAATATCGTCGGATTGCCCGATACCGAAGTTAAAGAAAGCCGCGACCGCGTGCGCGCCGCCATTA
TCCAAAGCGGTTTCGACTTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAATCGGGACGT
TTCGACCTGCCGATTGCGCTGGGCATCCTCGCTGCATCCGGACAAATCGCACCTGAAAAGCTCGCGCAATACGAGTTTGC
CGGCGAGTTGGCACTTTCCGGTATGTTGCGCCCCGTGCGTGGCGCGTTGGCGATGGCGTGGCAGGGCATGCAGGCGGGAC
GTTCTTTTGTCTTGCCGCAGGAAAACGCAGAACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCTATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATACCAAGTTCCTCAGATGCCGTCTGAAAA
CGCCAAACTGCCAGACCTCATTGATGTCAAGGGTCAACATACCGCCCGCCTTGCTTTGGAGATCGCCGCCGCAGGAGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAATCCATGCTTTCCCAACGGCTGCCCGGTATTCTGCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCGTTGCGTTCGCTCCTGCCCAACCACCAACAACAACTTGACAGCCACCGTCC
TTTCCGCAGTCCGCACCACAGTGCCAGTTCGGCAGCCATGGTCGGCGGCGGTTCCGATCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGCGTATTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTAGAAGTTTTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGTCAAGCCGTTTATCCGGCGAAATTCCAGCTTGTCGCCGCCATGAA
CCCTTGTCCTTGCGGTTATCTCGGGCATCCCATCAAACCCTGCCGTTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGTCCGCTGCTTGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCACGCGTGTTGGCGCGCGTGATCGCCGCCCGCGACAAACAATACGCGCGGCAAGGCAAAGT
GAATGCCGCCTTGAGTGTCAGTGAACTCGACACGTCCGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCAACCTGT
TGGAAAAACTTTCCCTCTCTGCCCGCAGCTTCCACCGTATCATGCGCGTGGCGCGTACGTTGGCGGATTTGGCAGGCGAC
GAAGAAGTCGGCAGAAGCCATGTTATGAAAGCCGTGGGCTTCCGTCGTGCTTTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

53.2

100

0.534
  comM Haemophilus influenzae Rd KW20

49.702

100

0.502
  comM Glaesserella parasuis strain SC1401

49.801

100

0.502
  comM Legionella pneumophila str. Paris

47.316

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.316

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

100

0.44

Multiple sequence alignment