Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NB068_RS07195 Genome accession   NZ_OW969598
Coordinates   1435337..1436530 (-) Length   397 a.a.
NCBI ID   WP_250314516.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1430337..1441530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS07175 - 1431375..1431692 (+) 318 WP_049322235.1 hypothetical protein -
  NB068_RS07180 - 1431699..1432394 (+) 696 WP_250314958.1 hypothetical protein -
  NB068_RS07185 topA 1432467..1434773 (-) 2307 WP_250314515.1 type I DNA topoisomerase -
  NB068_RS07190 - 1434853..1435314 (-) 462 WP_107960873.1 DUF494 family protein -
  NB068_RS07195 dprA 1435337..1436530 (-) 1194 WP_250314516.1 DNA-processing protein DprA Machinery gene
  NB068_RS07200 - 1436622..1437899 (-) 1278 WP_250314517.1 sigma-54 dependent transcriptional regulator -
  NB068_RS07205 - 1437904..1440009 (-) 2106 WP_250314518.1 PAS domain-containing sensor histidine kinase -
  NB068_RS07210 - 1440009..1440605 (-) 597 WP_002221831.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 42632.80 Da        Isoelectric Point: 6.1842

>NTDB_id=1153545 NB068_RS07195 WP_250314516.1 1435337..1436530(-) (dprA) [Neisseria sp. Marseille-Q6792]
MTENERFAWLQLAFTPYIGAESFLLLLHHFGSAQNALSAPAEQVAALIRHKQALEAWRGGDKCTAARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVQLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPVVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITARLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILHECPRLLQNEGASSYSINKGIPEKRITAVQT
ASDQPSPSEGKMPSEKTENRPVGGGILDRMGFDPVHPDVLAEQLGMPAADLYAELLELELNGSIAAIPGGRYQRIRT

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=1153545 NB068_RS07195 WP_250314516.1 1435337..1436530(-) (dprA) [Neisseria sp. Marseille-Q6792]
ATGACAGAGAACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGTGCGGAAAGTTTCTTGCTGCTGCT
GCACCATTTCGGCAGTGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCAC
TTGAGGCTTGGCGCGGTGGCGACAAATGTACTGCGGCGCGGCAGGCCGCCGAAGCGGCATTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGTAACGTGCAACTGCTGCATAAACCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCCATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCCGTTGTGTCGGGTATGGCTTCCGGTATCGATACT
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGTATAGACCGCATTTACCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGATTGATTGTCAGCGAGTTTCCTATCGGTACGCGGCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTGTCGCAAGTAACGCTGGTGGTTGAAGCCGCGTTGGAATCC
GGTTCGCTGATTACTGCCAGATTGGCGGCGGAGATGGGGCGCGAAGTGATGGCGGTACCCGGCTCGATAGACAATCCTCA
CAGTAAAGGCTGCCACAAACTGATTAAAGACGGCGCAAAATTGGTGGAATGCCTGGACGACATCCTTCATGAGTGTCCGC
GGCTCTTGCAAAATGAGGGTGCTTCATCATATTCTATAAATAAGGGAATACCTGAAAAGCGCATCACTGCCGTTCAGACG
GCATCCGACCAGCCGTCTCCGTCTGAAGGCAAAATGCCGTCTGAAAAGACGGAGAACCGACCCGTCGGCGGCGGTATCTT
GGACAGGATGGGTTTCGACCCGGTTCATCCCGATGTGCTTGCCGAGCAGTTGGGTATGCCTGCAGCAGACTTATACGCCG
AACTGTTGGAATTGGAACTGAACGGCAGCATTGCCGCCATACCCGGCGGCAGATACCAGCGTATCCGAACCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

93.199

100

0.932

  dprA Neisseria meningitidis MC58

93.199

100

0.932

  dprA Neisseria gonorrhoeae strain FA1090

86.65

100

0.867

  dprA Neisseria gonorrhoeae MS11

86.398

100

0.864

  dprA Vibrio cholerae strain A1552

37.845

100

0.38

  dprA Vibrio campbellii strain DS40M4

36.667

98.237

0.36


Multiple sequence alignment