Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ183_RS27025 Genome accession   NZ_OW968347
Coordinates   5752142..5753662 (+) Length   506 a.a.
NCBI ID   WP_126489636.1    Uniprot ID   -
Organism   Klebsiella oxytoca isolate 101     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5747142..5758662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ183_RS27005 (AI2945V1_5272) ilvE 5748707..5749636 (-) 930 WP_004107600.1 branched-chain-amino-acid transaminase -
  LQ183_RS27010 (AI2945V1_5273) ilvM 5749653..5749910 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  LQ183_RS27015 (AI2945V1_5274) ilvG 5749907..5751553 (-) 1647 WP_126489635.1 acetolactate synthase 2 catalytic subunit -
  LQ183_RS27020 ilvL 5751693..5751791 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQ183_RS27025 (AI2945V1_5275) comM 5752142..5753662 (+) 1521 WP_126489636.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ183_RS27030 (AI2945V1_5276) - 5753686..5754024 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  LQ183_RS27035 (AI2945V1_5277) hdfR 5754143..5754964 (+) 822 WP_004107593.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55318.69 Da        Isoelectric Point: 8.4834

>NTDB_id=1153487 LQ183_RS27025 WP_126489636.1 5752142..5753662(+) (comM) [Klebsiella oxytoca isolate 101]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNAPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLDGKNPLNHPIPEAESSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASLAAMVGGGSIPTPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153487 LQ183_RS27025 WP_126489636.1 5752142..5753662(+) (comM) [Klebsiella oxytoca isolate 101]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATGCTCCCAGGCTAAATCAATACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGTGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATCGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGACGGGAAAAACCCGCTAAATCATCCCATTCCGGAAGCGGAGTCCTCAGATGAGTCTTC
ATTAGACCTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTCGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCTTCCCTGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGATCTCTCTCGCTC
ATAATGGCGTGCTGTTCCTTGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCATTATCAGGGTCAGCATAATCGTGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTTCGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.332

100

0.597
  comM Glaesserella parasuis strain SC1401

58.939

100

0.593
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

48.79

98.024

0.478
  comM Legionella pneumophila strain ERS1305867

48.79

98.024

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.445

Multiple sequence alignment