Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ108_RS22465 Genome accession   NZ_OW968328
Coordinates   4727746..4729266 (+) Length   506 a.a.
NCBI ID   WP_230137085.1    Uniprot ID   -
Organism   Enterobacter cloacae isolate 1382     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4722746..4734266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ108_RS22440 (AI2999V1_4361) ilvE 4724311..4725240 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  LQ108_RS22445 (AI2999V1_4362) ilvM 4725259..4725522 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  LQ108_RS22450 (AI2999V1_4363) ilvG 4725519..4727165 (-) 1647 WP_230137083.1 acetolactate synthase 2 catalytic subunit -
  LQ108_RS22455 ilvX 4727168..4727218 (-) 51 WP_102046757.1 peptide IlvX -
  LQ108_RS22460 ilvL 4727305..4727403 (-) 99 WP_023620831.1 ilv operon leader peptide -
  LQ108_RS22465 (AI2999V1_4364) comM 4727746..4729266 (+) 1521 WP_230137085.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ108_RS22470 (AI2999V1_4365) - 4729298..4729636 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  LQ108_RS22475 (AI2999V1_4366) hdfR 4729755..4730576 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54954.88 Da        Isoelectric Point: 6.9981

>NTDB_id=1153462 LQ108_RS22465 WP_230137085.1 4727746..4729266(+) (comM) [Enterobacter cloacae isolate 1382]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIITSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPEETGDILPETPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTANVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153462 LQ108_RS22465 WP_230137085.1 4727746..4729266(+) (comM) [Enterobacter cloacae isolate 1382]
ATGTCACTGTCAGTTGTTTACACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCACTAGCGGTTATACCTTCCCCGCTAAGAAGATCACGATCAATCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGGTGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAACCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAATGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCTGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCAGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAATGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.824

100

0.593
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439

Multiple sequence alignment