Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQ093_RS21235 Genome accession   NZ_OW967953
Coordinates   4508767..4509297 (-) Length   176 a.a.
NCBI ID   WP_046897200.1    Uniprot ID   -
Organism   Serratia marcescens isolate 0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4503767..4514297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ093_RS21205 (AI2857V1_4069) - 4504092..4505453 (-) 1362 WP_033636185.1 NCS2 family permease -
  LQ093_RS21210 (AI2857V1_4070) - 4505786..4506193 (-) 408 WP_039569623.1 VOC family protein -
  LQ093_RS21215 (AI2857V1_4071) - 4506241..4506909 (-) 669 WP_039569625.1 glutathione S-transferase family protein -
  LQ093_RS21220 (AI2857V1_4072) - 4506906..4507349 (-) 444 WP_039569627.1 lipocalin-like domain-containing protein -
  LQ093_RS21225 (AI2857V1_4073) - 4507546..4507806 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  LQ093_RS21230 (AI2857V1_4074) - 4507956..4508705 (+) 750 WP_039569629.1 3-oxoacyl-ACP reductase family protein -
  LQ093_RS21235 (AI2857V1_4075) ssb 4508767..4509297 (-) 531 WP_046897200.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LQ093_RS21240 (AI2857V1_4076) uvrA 4509575..4512403 (+) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  LQ093_RS21245 (AI2857V1_4077) - 4512632..4513684 (+) 1053 WP_197772518.1 NAD(P)-dependent alcohol dehydrogenase -
  LQ093_RS21250 (AI2857V1_4078) maa 4513714..4514271 (-) 558 WP_060706857.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18778.68 Da        Isoelectric Point: 5.2358

>NTDB_id=1153223 LQ093_RS21235 WP_046897200.1 4508767..4509297(-) (ssb) [Serratia marcescens isolate 0]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1153223 LQ093_RS21235 WP_046897200.1 4508767..4509297(-) (ssb) [Serratia marcescens isolate 0]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.677

100

0.631
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369

Multiple sequence alignment