Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ102_RS23590 Genome accession   NZ_OW967830
Coordinates   5006507..5008030 (+) Length   507 a.a.
NCBI ID   WP_060431554.1    Uniprot ID   -
Organism   Serratia marcescens isolate 0     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5001507..5013030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ102_RS23565 (AI2872V1_4521) - 5001708..5002634 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  LQ102_RS23570 (AI2872V1_4522) ilvM 5002658..5002915 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  LQ102_RS23575 (AI2872V1_4523) ilvG 5002912..5004558 (-) 1647 WP_049212968.1 acetolactate synthase 2 catalytic subunit -
  LQ102_RS23580 ilvL 5004701..5004799 (-) 99 WP_013814970.1 ilv operon leader peptide -
  LQ102_RS23585 (AI2872V1_4524) - 5004933..5006165 (-) 1233 WP_033636415.1 MFS transporter -
  LQ102_RS23590 (AI2872V1_4525) comM 5006507..5008030 (+) 1524 WP_060431554.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ102_RS23595 (AI2872V1_4526) - 5008058..5008396 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  LQ102_RS23600 (AI2872V1_4527) hdfR 5008516..5009343 (+) 828 WP_033649961.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54449.77 Da        Isoelectric Point: 8.2129

>NTDB_id=1153179 LQ102_RS23590 WP_060431554.1 5006507..5008030(+) (comM) [Serratia marcescens isolate 0]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAATDAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHHIPTALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQKVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVLLARARQLERAGKVNALLSNREVERDCVLQSADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1153179 LQ102_RS23590 WP_060431554.1 5006507..5008030(+) (comM) [Serratia marcescens isolate 0]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAATAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCTCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGACTGATGCCGGGC
GGCAACTGATCCTCTCAACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGATATCATCGGCCAGGAGCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGGGCATAACC
TATTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGCCTCACGGGCCTACTGCCACCGCTCACGGAG
CCTGAGGCGCTGGAAAGTCTAGCGGTCGCCAGCTTGCAGCATCACATTCCCACTGCCCTACCATGGCGCCAGAGGCCGTT
TCGCGCACCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGCTGATCGCGGCAATGAACCC
CAGCCCGACGGGGCACTATCAGGGGTTGCACAATCGCGCCTCACCGCAGAAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTGCCGCCGGGAACACTCAGTCATCGGAAAACACAC
GGAGAAAGCAGCGAACAAGTGCGGAAAAGAGTGCTGCTGGCACGCGCCCGGCAACTTGAACGCGCCGGTAAAGTCAACGC
GCTGCTGAGCAACCGCGAAGTGGAACGGGATTGCGTTCTGCAGTCGGCAGACGCCGAGTTTTTGGAGGCGACATTAAACG
CGCTGGGGTTATCGGTTCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTAGCGGGAGATGCTGAG
CTCGACAGGCGCCACCTCAGCGAAGCACTGGGCTATCGCAGCATGGACCGCCTGCTGTTACAACTGCATCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

65.68

100

0.657
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.143

99.014

0.635
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.205

100

0.456

Multiple sequence alignment