Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ212_RS27455 Genome accession   NZ_OW967374
Coordinates   5815311..5816831 (+) Length   506 a.a.
NCBI ID   WP_064343648.1    Uniprot ID   -
Organism   Klebsiella oxytoca isolate 145     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5810311..5821831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ212_RS27435 (AI2623V1_5361) ilvE 5811876..5812805 (-) 930 WP_004107600.1 branched-chain-amino-acid transaminase -
  LQ212_RS27440 (AI2623V1_5362) ilvM 5812822..5813079 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  LQ212_RS27445 (AI2623V1_5363) ilvG 5813076..5814722 (-) 1647 WP_004107597.1 acetolactate synthase 2 catalytic subunit -
  LQ212_RS27450 ilvL 5814862..5814960 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQ212_RS27455 (AI2623V1_5364) comM 5815311..5816831 (+) 1521 WP_064343648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ212_RS27460 (AI2623V1_5365) - 5816855..5817193 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  LQ212_RS27465 (AI2623V1_5366) hdfR 5817312..5818133 (+) 822 WP_064343647.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55394.80 Da        Isoelectric Point: 8.4834

>NTDB_id=1153087 LQ212_RS27455 WP_064343648.1 5815311..5816831(+) (comM) [Klebsiella oxytoca isolate 145]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLEGKNPLNHPIPEAETSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASMAAMVGGGSIPTPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1153087 LQ212_RS27455 WP_064343648.1 5815311..5816831(+) (comM) [Klebsiella oxytoca isolate 145]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATACTCCCAGGCTAAATCAATACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGCGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATCGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGAGGGAAAAAACCCGCTAAATCATCCTATTCCGGAAGCGGAGACCTCAGATGAGTCTTC
ATTAGACTTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTTGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCGTCCATGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGATCTCTCTCGCTC
ATAATGGCGTGCTGTTCCTGGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCACTATCAGGGTCAGCATAATCGCGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTACGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.332

100

0.597
  comM Glaesserella parasuis strain SC1401

59.136

100

0.595
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.964

99.209

0.585
  comM Legionella pneumophila str. Paris

48.79

98.024

0.478
  comM Legionella pneumophila strain ERS1305867

48.79

98.024

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443

Multiple sequence alignment