Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ213_RS26330 Genome accession   NZ_OW849470
Coordinates   5639039..5640559 (+) Length   506 a.a.
NCBI ID   WP_230186230.1    Uniprot ID   -
Organism   Klebsiella oxytoca isolate 325     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5634039..5645559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ213_RS26310 (AI2699V1_5116) ilvE 5635604..5636533 (-) 930 WP_064373724.1 branched-chain-amino-acid transaminase -
  LQ213_RS26315 (AI2699V1_5117) ilvM 5636550..5636807 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  LQ213_RS26320 (AI2699V1_5118) ilvG 5636804..5638450 (-) 1647 WP_064373726.1 acetolactate synthase 2 catalytic subunit -
  LQ213_RS26325 ilvL 5638590..5638688 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LQ213_RS26330 (AI2699V1_5119) comM 5639039..5640559 (+) 1521 WP_230186230.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ213_RS26335 (AI2699V1_5120) - 5640583..5640921 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  LQ213_RS26340 (AI2699V1_5121) hdfR 5641040..5641861 (+) 822 WP_004116933.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55375.74 Da        Isoelectric Point: 8.7648

>NTDB_id=1152949 LQ213_RS26330 WP_230186230.1 5639039..5640559(+) (comM) [Klebsiella oxytoca isolate 325]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNAPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLEGKNPLNHPIPEAESSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASLAAMVGGGSIPTPGERSLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1152949 LQ213_RS26330 WP_230186230.1 5639039..5640559(+) (comM) [Klebsiella oxytoca isolate 325]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATGCTCCCAGGCTAAATCAGTACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGCGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATCGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGAGGGAAAAAACCCGCTAAATCATCCCATTCCGGAAGCGGAGAGCTCAGATGAGTCTTC
ATTAGACCTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTTGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCTTCCCTGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGAGATCTCTCGCTC
ATAATGGCGTGCTGTTCCTTGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCATTATCAGGGTCAGCATAATCGTGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTACGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.136

100

0.595
  comM Glaesserella parasuis strain SC1401

58.743

100

0.591
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

48.589

98.024

0.476
  comM Legionella pneumophila strain ERS1305867

48.589

98.024

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.443

Multiple sequence alignment