Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQ078_RS22015 Genome accession   NZ_OW849111
Coordinates   4669964..4670497 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens isolate 0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4664964..4675497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ078_RS21985 (AI2616V1_4201) - 4665288..4666649 (-) 1362 WP_033636185.1 NCS2 family permease -
  LQ078_RS21990 (AI2616V1_4202) - 4666982..4667389 (-) 408 WP_033649719.1 VOC family protein -
  LQ078_RS21995 (AI2616V1_4203) - 4667437..4668105 (-) 669 WP_033649718.1 glutathione S-transferase family protein -
  LQ078_RS22000 (AI2616V1_4204) - 4668102..4668545 (-) 444 WP_033636188.1 lipocalin-like domain-containing protein -
  LQ078_RS22005 (AI2616V1_4205) - 4668742..4669002 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  LQ078_RS22010 (AI2616V1_4206) - 4669152..4669901 (+) 750 WP_033654706.1 3-oxoacyl-ACP reductase family protein -
  LQ078_RS22015 (AI2616V1_4207) ssb 4669964..4670497 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LQ078_RS22020 (AI2616V1_4208) uvrA 4670775..4673603 (+) 2829 WP_033654708.1 excinuclease ABC subunit UvrA -
  LQ078_RS22025 (AI2616V1_4209) - 4673832..4674884 (+) 1053 WP_033654709.1 NAD(P)-dependent alcohol dehydrogenase -
  LQ078_RS22030 (AI2616V1_4210) maa 4674915..4675472 (-) 558 WP_033654710.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=1152808 LQ078_RS22015 WP_033654707.1 4669964..4670497(-) (ssb) [Serratia marcescens isolate 0]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1152808 LQ078_RS22015 WP_033654707.1 4669964..4670497(-) (ssb) [Serratia marcescens isolate 0]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment