Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   NBW44_RS05510 Genome accession   NZ_OW724079
Coordinates   1094248..1094907 (+) Length   219 a.a.
NCBI ID   WP_250307538.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1089248..1099907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS05460 - 1089525..1089752 (-) 228 WP_075568018.1 hypothetical protein -
  NBW44_RS05465 - 1089855..1090106 (-) 252 WP_250307532.1 hypothetical protein -
  NBW44_RS05470 - 1090274..1090519 (-) 246 WP_250307533.1 DUF4190 domain-containing protein -
  NBW44_RS05475 - 1090698..1090931 (-) 234 WP_142556577.1 DUF4190 domain-containing protein -
  NBW44_RS05480 - 1091018..1091398 (-) 381 WP_250307534.1 rhodanese-like domain-containing protein -
  NBW44_RS05485 - 1091404..1091628 (-) 225 WP_185928421.1 YqgQ family protein -
  NBW44_RS05490 - 1091679..1092146 (-) 468 WP_250307535.1 ECF transporter S component -
  NBW44_RS05495 - 1092124..1092897 (-) 774 WP_250307536.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NBW44_RS05500 truA 1092887..1093636 (-) 750 WP_250307537.1 tRNA pseudouridine(38-40) synthase TruA -
  NBW44_RS05505 - 1093722..1094177 (-) 456 WP_075568094.1 GNAT family N-acetyltransferase -
  NBW44_RS05510 cclA/cilC 1094248..1094907 (+) 660 WP_250307538.1 A24 family peptidase Machinery gene
  NBW44_RS05515 - 1094949..1095512 (-) 564 WP_250307539.1 aminodeoxychorismate/anthranilate synthase component II -
  NBW44_RS05520 trpB 1095540..1096721 (-) 1182 WP_250307540.1 tryptophan synthase subunit beta -
  NBW44_RS05525 - 1097155..1098378 (-) 1224 WP_250307541.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  NBW44_RS05530 - 1098407..1099099 (-) 693 WP_250307542.1 sugar transferase -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24980.20 Da        Isoelectric Point: 8.3857

>NTDB_id=1152606 NBW44_RS05510 WP_250307538.1 1094248..1094907(+) (cclA/cilC) [Streptococcus sp. Marseille-Q3533]
MIHLYFFLVGAIFASFLGLVIDRFPEQSIIFPASHCDSCQTRLRPLDLIPFLSQVFNRFRCRYCKSSYPVWYVFELSLGL
LFLAESVGFLTLGQVILITAGLTLGIYDFRHQEYPLLVWLIFHLFLMFFCSWNLAMAFLLILGIIAHFIDIRIGAGDFLF
LASCALIFSPTELLILIQFASTTGILAFLLQKKKKRLPFVPFLLFATCTIILGKLLLIG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1152606 NBW44_RS05510 WP_250307538.1 1094248..1094907(+) (cclA/cilC) [Streptococcus sp. Marseille-Q3533]
ATGATTCATCTTTACTTTTTTCTTGTTGGAGCTATTTTTGCTTCCTTTCTAGGTCTTGTCATTGACCGCTTTCCTGAGCA
GTCTATTATCTTTCCTGCTAGTCACTGTGATTCTTGTCAGACTCGTTTGAGACCACTGGATTTGATTCCATTTCTCTCAC
AGGTATTCAATCGCTTTCGCTGTCGCTATTGCAAGTCAAGTTATCCTGTCTGGTATGTCTTTGAGTTGTCCTTGGGACTG
CTCTTTCTAGCTGAGTCTGTGGGATTTTTAACTTTGGGGCAAGTCATCTTGATAACTGCCGGATTGACTTTGGGCATCTA
CGACTTTCGTCATCAGGAATATCCTTTGCTCGTTTGGCTGATTTTTCACTTATTCCTCATGTTTTTCTGTAGTTGGAATC
TGGCCATGGCTTTCTTATTGATTCTTGGAATCATTGCTCATTTCATCGATATCCGCATAGGTGCAGGGGATTTTCTCTTT
CTGGCTTCCTGTGCGCTTATCTTTAGTCCGACAGAATTACTAATTTTGATACAGTTCGCTTCTACAACTGGCATTCTAGC
TTTTCTCCTGCAAAAGAAAAAGAAAAGGCTCCCATTCGTGCCTTTCCTCTTATTTGCTACCTGTACGATTATTTTGGGTA
AGCTTTTGCTTATAGGATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

79.452

100

0.795

  cclA/cilC Streptococcus mitis NCTC 12261

78.082

100

0.781

  cclA/cilC Streptococcus pneumoniae TIGR4

76.712

100

0.767

  cclA/cilC Streptococcus pneumoniae Rx1

76.712

100

0.767

  cclA/cilC Streptococcus pneumoniae D39

76.712

100

0.767

  cclA/cilC Streptococcus pneumoniae R6

76.712

100

0.767


Multiple sequence alignment