Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NBW44_RS02680 Genome accession   NZ_OW724079
Coordinates   530290..531246 (+) Length   318 a.a.
NCBI ID   WP_250307103.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525290..536246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS02665 smpB 527500..527967 (+) 468 WP_001051741.1 SsrA-binding protein SmpB -
  NBW44_RS02670 tehB 527982..528842 (+) 861 WP_250307101.1 SAM-dependent methyltransferase TehB -
  NBW44_RS02675 - 529043..530185 (+) 1143 WP_250307102.1 hypothetical protein -
  NBW44_RS02680 coiA 530290..531246 (+) 957 WP_250307103.1 competence protein CoiA family protein Machinery gene
  NBW44_RS02685 pepF 531265..533067 (+) 1803 WP_250307104.1 oligoendopeptidase F Regulator
  NBW44_RS02690 - 533073..533786 (+) 714 WP_250307105.1 O-methyltransferase -
  NBW44_RS02695 prsA 533858..534802 (+) 945 WP_250307106.1 peptidylprolyl isomerase PrsA -
  NBW44_RS02700 - 535010..536221 (+) 1212 WP_250307107.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 38182.73 Da        Isoelectric Point: 9.2898

>NTDB_id=1152590 NBW44_RS02680 WP_250307103.1 530290..531246(+) (coiA) [Streptococcus sp. Marseille-Q3533]
MFLARDEKGNLVNSLEDDLVKQNYTCPACGSIVQLRRGQNKRAHFAHQSLKNCQFFHENESPEHLGNKQALFYWAKKDDE
VSLEFPISQCQQIADILVRGNLALEIQCSPIRQSILAERSRGYRSHGFKVLWLLGEKLWLKERLTQLQRGFLYFSNNMGF
YVWELDLKNELLRLKYLLHQDLRGKLHYQTKEFPYGKGDLLEILRIPYQKQRLQCFTVEQDRYICSYIRQQLYYQNSYWM
KKQSQAYLVGKNLLNLNFQDWYPQVSPIENGNFYQVDKDISDYYLHFKSYYEKNPQLKHQKLYPPAFYQQYFLKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1152590 NBW44_RS02680 WP_250307103.1 530290..531246(+) (coiA) [Streptococcus sp. Marseille-Q3533]
ATGTTTTTAGCAAGAGATGAAAAAGGGAATTTAGTGAATTCTTTGGAAGATGATTTAGTTAAACAAAATTACACTTGTCC
AGCATGTGGATCCATAGTACAACTAAGAAGAGGACAGAATAAGAGAGCACATTTTGCCCATCAATCTCTTAAGAACTGTC
AGTTTTTCCATGAAAACGAAAGTCCTGAACATTTAGGAAACAAGCAGGCTCTTTTTTATTGGGCCAAAAAGGATGATGAG
GTGTCTTTGGAATTTCCTATATCTCAATGCCAACAAATCGCAGACATTTTAGTAAGAGGAAACTTGGCTCTTGAAATTCA
ATGCAGTCCCATAAGACAAAGTATTTTGGCTGAAAGAAGTAGGGGCTACCGTAGTCATGGTTTTAAAGTTCTTTGGCTAT
TAGGAGAAAAACTGTGGTTAAAAGAACGTTTGACGCAACTACAAAGAGGCTTCCTTTACTTTAGTAATAATATGGGGTTC
TATGTATGGGAATTGGATCTGAAGAACGAATTGCTGCGACTTAAATACTTGCTTCATCAAGACTTACGCGGGAAATTACA
TTATCAGACCAAAGAGTTCCCCTATGGGAAAGGTGATCTCTTAGAAATATTGCGTATCCCTTATCAAAAACAAAGACTAC
AGTGCTTTACTGTTGAGCAAGATAGATATATCTGTTCTTACATTCGACAGCAACTCTACTATCAAAATTCTTACTGGATG
AAAAAGCAATCACAAGCATATCTAGTGGGGAAAAATTTACTTAATCTAAACTTTCAAGATTGGTACCCTCAAGTAAGTCC
TATTGAAAATGGGAATTTTTATCAAGTTGACAAAGACATCAGTGATTATTATCTACATTTTAAATCTTACTATGAAAAAA
ATCCTCAATTGAAACATCAAAAGCTTTATCCGCCAGCCTTTTATCAACAGTATTTTCTGAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

65.094

100

0.651
  coiA Streptococcus pneumoniae D39

65.094

100

0.651
  coiA Streptococcus pneumoniae R6

65.094

100

0.651
  coiA Streptococcus pneumoniae TIGR4

64.78

100

0.648
  coiA Streptococcus mitis NCTC 12261

64.78

100

0.648
  coiA Lactococcus lactis subsp. cremoris KW2

41.925

100

0.425

Multiple sequence alignment