Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NBW44_RS02685 Genome accession   NZ_OW724079
Coordinates   531265..533067 (+) Length   600 a.a.
NCBI ID   WP_250307104.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 526265..538067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS02665 smpB 527500..527967 (+) 468 WP_001051741.1 SsrA-binding protein SmpB -
  NBW44_RS02670 tehB 527982..528842 (+) 861 WP_250307101.1 SAM-dependent methyltransferase TehB -
  NBW44_RS02675 - 529043..530185 (+) 1143 WP_250307102.1 hypothetical protein -
  NBW44_RS02680 coiA 530290..531246 (+) 957 WP_250307103.1 competence protein CoiA family protein Machinery gene
  NBW44_RS02685 pepF 531265..533067 (+) 1803 WP_250307104.1 oligoendopeptidase F Regulator
  NBW44_RS02690 - 533073..533786 (+) 714 WP_250307105.1 O-methyltransferase -
  NBW44_RS02695 prsA 533858..534802 (+) 945 WP_250307106.1 peptidylprolyl isomerase PrsA -
  NBW44_RS02700 - 535010..536221 (+) 1212 WP_250307107.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69911.92 Da        Isoelectric Point: 4.5860

>NTDB_id=1152591 NBW44_RS02685 WP_250307104.1 531265..533067(+) (pepF) [Streptococcus sp. Marseille-Q3533]
MVLQRNEINEKYTWDLSTIFATDQAWEEELALLSKDTKESSNFEGRLLESAASLLEITELYLDLNRRLEKLYVYAHMKND
QDTRVAKYQEYYAKAMTLYSQLDQVFSFYEPEFMKITEEQYHAFLEAEPKLQIYKHFFNTLLQNKDHVLSQHEEELLAGA
GEIFGSASETFAILDNADITFPYVLDDEGNEVQLSHGTYSRLMESKNREVRRGAYEALYSTYKQFQHTYAKTLQTNVKVQ
NYRAKVRNYQSARQAALAANFVPESVYDNLVSAVRKHLPLLQRYLDLRSKILGIPDLKMYDVYTPLSSVEYSFTYPEALK
KAEEALAVLGDDYLTRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLDEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEF
LNELYADLNETYYGLKKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLELA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1152591 NBW44_RS02685 WP_250307104.1 531265..533067(+) (pepF) [Streptococcus sp. Marseille-Q3533]
ATGGTATTACAAAGAAATGAAATCAATGAAAAATATACTTGGGATCTATCTACTATCTTCGCTACTGACCAAGCTTGGGA
AGAAGAGTTAGCACTTCTAAGCAAAGACACGAAAGAATCTTCTAACTTTGAGGGAAGACTTTTGGAAAGTGCTGCTAGCT
TATTAGAGATTACAGAACTTTATTTGGATTTAAATCGTCGTCTTGAAAAACTCTATGTCTACGCTCATATGAAAAACGAC
CAGGATACACGAGTTGCTAAATATCAAGAATACTATGCAAAGGCAATGACACTATATAGTCAATTAGATCAAGTCTTTTC
TTTCTATGAGCCTGAGTTTATGAAGATTACTGAAGAACAGTATCATGCTTTCTTAGAGGCAGAGCCAAAGCTTCAGATAT
ATAAACACTTTTTTAATACATTATTGCAAAATAAGGATCATGTTCTTTCTCAACATGAAGAAGAACTACTTGCTGGAGCT
GGAGAAATTTTTGGTTCGGCTAGTGAGACTTTTGCAATCTTGGACAATGCTGATATTACCTTCCCTTATGTACTAGATGA
TGAAGGAAATGAAGTGCAACTATCACACGGGACCTACTCACGCTTAATGGAATCAAAAAATCGTGAGGTACGTCGTGGCG
CTTATGAAGCTCTCTATTCAACTTATAAGCAGTTCCAACATACATATGCTAAAACACTTCAAACAAACGTAAAAGTACAA
AACTATCGTGCTAAAGTGCGCAATTACCAAAGTGCACGTCAGGCAGCTCTTGCAGCTAACTTTGTCCCTGAAAGTGTATA
TGATAATCTGGTGTCAGCTGTTCGTAAGCATTTGCCACTTTTGCAACGTTATCTTGACCTTCGTTCAAAAATCTTAGGTA
TTCCAGATCTCAAAATGTACGATGTTTACACACCACTTTCATCGGTTGAATATAGCTTTACTTATCCAGAAGCCTTGAAG
AAAGCCGAAGAAGCTTTGGCTGTTCTTGGTGATGATTATTTGACTCGTGTTAAACGTGCCTTTAGCGAACGTTGGATTGA
TGTTTATGAAAACCAAGGCAAGCGTTCAGGTGCTTATTCAGGTGGATCTTACGATACTAACGCATTTATGCTTCTTAACT
GGCAGGATAACTTAGACAATCTCTTTACCCTTGTACATGAGACTGGACACAGTATGCATTCAAGCTATACTCGTGAAACC
CAGCCATACGTTTACGGAGACTATTCAATTTTCTTAGCTGAGATTGCTTCAACAACTAATGAGAATATCCTAACGGAAAA
ACTGTTAGACGAAGTTGAAGATGATGCAACACGCTTTGCTATTCTCAATAACTTCTTGGACGGCTTCCGAGGAACGGTCT
TCCGTCAAACCCAATTTGCTGAATTTGAGCACGCCATTCACCAAGCTGACCAAAATGGAGAAGTCTTGACTAGTGAGTTC
TTAAATGAACTTTATGCTGACTTGAATGAAACATATTATGGTTTGAAAAAAGAAGATAACCCTGAAATTCAATATGAATG
GGCTCGTATTCCTCATTTCTACTATAACTATTATGTTTATCAATATTCAACAGGTTTTGCTGCTGCCTCAGCCCTAGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGATCGTGACCGCTATATTGATTACCTCAAGGCTGGTAAGTCTGATTATCCACTC
AATGTTATGAGAAAAGCTGGCGTTGATATGGAAAAAGAAGACTACCTCAACGATGCTTTTGCAGTCTTTGAACGTCGCTT
AAATGAGTTTGAAGCACTTGTAGAAAAATTAGAATTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.289

99.333

0.678

Multiple sequence alignment