Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NBW44_RS01860 Genome accession   NZ_OW724079
Coordinates   356830..357300 (+) Length   156 a.a.
NCBI ID   WP_250306978.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 351830..362300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS01830 - 352203..353072 (+) 870 WP_250306974.1 branched-chain amino acid ABC transporter permease -
  NBW44_RS01835 - 353076..354032 (+) 957 WP_250306975.1 branched-chain amino acid ABC transporter permease -
  NBW44_RS01840 - 354032..354796 (+) 765 WP_250306976.1 ABC transporter ATP-binding protein -
  NBW44_RS01845 - 354796..355506 (+) 711 WP_142557871.1 ABC transporter ATP-binding protein -
  NBW44_RS01850 - 355741..356397 (+) 657 WP_250306977.1 CBS domain-containing protein -
  NBW44_RS01855 rpsF 356528..356818 (+) 291 WP_075566882.1 30S ribosomal protein S6 -
  NBW44_RS01860 ssbA 356830..357300 (+) 471 WP_250306978.1 single-stranded DNA-binding protein SsbA Machinery gene
  NBW44_RS01865 rpsR 357332..357571 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  NBW44_RS01870 - 357737..358246 (+) 510 WP_250306979.1 GNAT family N-acetyltransferase -
  NBW44_RS01875 - 358327..359727 (+) 1401 WP_250306980.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NBW44_RS01880 - 359729..360091 (+) 363 WP_075566890.1 S1 RNA-binding domain-containing protein -
  NBW44_RS01885 - 360137..360886 (+) 750 WP_250307973.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NBW44_RS01890 - 360876..361160 (+) 285 WP_247921732.1 GIY-YIG nuclease family protein -
  NBW44_RS01895 - 361245..362180 (+) 936 WP_250306981.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17261.13 Da        Isoelectric Point: 5.2065

>NTDB_id=1152587 NBW44_RS01860 WP_250306978.1 356830..357300(+) (ssbA) [Streptococcus sp. Marseille-Q3533]
MINNVVLVGRMTRDAELRYTLSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSAREGQTGGAYSAPSASHAAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1152587 NBW44_RS01860 WP_250306978.1 356830..357300(+) (ssbA) [Streptococcus sp. Marseille-Q3533]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTACGTTATACCCTATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTAATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAAGTCGTAGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGCTCGTGAAGGACAGACTGGTGGAGCTTATTCTGCACCAAGTGCTAGTCATGCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAGAATCCATTTGGAGCAACAAATCCTTTGGATATTTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.603
  ssb Latilactobacillus sakei subsp. sakei 23K

52.273

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.294

69.872

0.365

Multiple sequence alignment