Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F543_RS12350 Genome accession   NZ_CP006955
Coordinates   1455878..1456471 (+) Length   197 a.a.
NCBI ID   WP_331279682.1    Uniprot ID   -
Organism   Bibersteinia trehalosi USDA-ARS-USMARC-189     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450878..1461471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F543_RS06785 (F543_14240) radA 1451828..1453207 (-) 1380 WP_015432352.1 DNA repair protein RadA Machinery gene
  F543_RS06790 (F543_14250) pilA 1453382..1453828 (+) 447 WP_025267127.1 prepilin peptidase-dependent pilin Machinery gene
  F543_RS06795 (F543_14260) pilB 1453886..1455283 (+) 1398 WP_015432350.1 GspE/PulE family protein Machinery gene
  F543_RS12345 (F543_14270) pilC 1455276..1455779 (+) 504 WP_331279681.1 type II secretion system F family protein Machinery gene
  F543_RS12350 (F543_14280) pilC 1455878..1456471 (+) 594 WP_331279682.1 type II secretion system F family protein Machinery gene
  F543_RS06805 (F543_14290) - 1456468..1457133 (+) 666 WP_025328967.1 prepilin peptidase -
  F543_RS06810 (F543_14300) coaE 1457163..1457786 (+) 624 WP_015432347.1 dephospho-CoA kinase -
  F543_RS06815 (F543_14310) yacG 1457783..1457989 (+) 207 WP_015432346.1 DNA gyrase inhibitor YacG -
  F543_RS06820 (F543_14320) - 1458049..1458603 (-) 555 WP_015432345.1 hypothetical protein -
  F543_RS06825 (F543_14330) - 1458738..1459922 (-) 1185 WP_015432344.1 FAD-dependent monooxygenase -
  F543_RS06830 (F543_14340) rapZ 1459924..1460787 (-) 864 WP_015432343.1 RNase adapter RapZ -
  F543_RS06835 (F543_14350) - 1460787..1461305 (-) 519 WP_015432342.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22542.16 Da        Isoelectric Point: 8.2628

>NTDB_id=115234 F543_RS12350 WP_331279682.1 1455878..1456471(+) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-189]
MTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQILTRLKAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRL
DSVLDSFISAKNNDPILSPELSKTLARLKQGYRLSDCLPAHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQID
LLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=115234 F543_RS12350 WP_331279682.1 1455878..1456471(+) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-189]
ATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTACAACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAG
CTTGTTACTATATTTTATTAGTAAAAAAACTCAAATTCTTACCCGCTTGAAAGCTCAGATTCTTTCTATTCTACCACTGT
TTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTTCTGCTACAACTGTGGATTAATGCTGCAAGCACACTTACGTCTT
GACAGCGTACTTGATAGTTTTATCTCAGCCAAAAACAACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCACG
CTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCTGCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAG
GTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACAAGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGAC
TTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCGTGATAGGATTCATTGTCGGTACTATTTTAATCGGTTTATATCT
ACCTATTTTTGATATGGGAGCAATGATTGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

56.345

100

0.563
  pilC Haemophilus influenzae Rd KW20

42.718

100

0.447
  pilC Haemophilus influenzae 86-028NP

42.233

100

0.442

Multiple sequence alignment