Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QM552_RS05130 Genome accession   NZ_OW011623
Coordinates   1103034..1104536 (-) Length   500 a.a.
NCBI ID   WP_004260207.1    Uniprot ID   A0A127K8J5
Organism   Thauera humireducens strain Piv1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1089394..1110188 1103034..1104536 within 0


Gene organization within MGE regions


Location: 1089394..1110188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS05065 (C4PIVTH_1054) cas1c 1089394..1090434 (-) 1041 WP_004260244.1 type I-C CRISPR-associated endonuclease Cas1c -
  QM552_RS05070 (C4PIVTH_1055) cas4 1090438..1091073 (-) 636 WP_004260241.1 CRISPR-associated protein Cas4 -
  QM552_RS05075 (C4PIVTH_1056) cas7c 1091099..1091992 (-) 894 WP_004260238.1 type I-C CRISPR-associated protein Cas7/Csd2 -
  QM552_RS05080 (C4PIVTH_1057) cas8c 1091989..1093824 (-) 1836 WP_004260234.1 type I-C CRISPR-associated protein Cas8c/Csd1 -
  QM552_RS05085 (C4PIVTH_1058) cas5c 1093821..1094495 (-) 675 WP_004260232.1 type I-C CRISPR-associated protein Cas5c -
  QM552_RS05090 (C4PIVTH_1059) - 1094492..1094830 (-) 339 WP_038011658.1 hypothetical protein -
  QM552_RS05095 (C4PIVTH_1060) - 1094830..1097139 (-) 2310 WP_083483089.1 CRISPR-associated helicase/endonuclease Cas3 -
  QM552_RS05100 (C4PIVTH_1062) - 1097652..1098767 (+) 1116 WP_004260227.1 branched-chain amino acid ABC transporter substrate-binding protein -
  QM552_RS05105 (C4PIVTH_1063) - 1098928..1099860 (+) 933 WP_004260224.1 branched-chain amino acid ABC transporter permease -
  QM552_RS05110 (C4PIVTH_1064) - 1099876..1100973 (+) 1098 WP_004260221.1 ABC transporter permease subunit -
  QM552_RS05115 (C4PIVTH_1065) - 1100970..1101743 (+) 774 WP_004260218.1 ABC transporter ATP-binding protein -
  QM552_RS05120 (C4PIVTH_1066) - 1101733..1102467 (+) 735 WP_004260215.1 ABC transporter ATP-binding protein -
  QM552_RS05125 (C4PIVTH_1067) - 1102593..1102985 (+) 393 WP_004260211.1 rhodanese-like domain-containing protein -
  QM552_RS05130 (C4PIVTH_1068) comM 1103034..1104536 (-) 1503 WP_004260207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QM552_RS05135 (C4PIVTH_1069) - 1104627..1104884 (-) 258 WP_004260204.1 accessory factor UbiK family protein -
  QM552_RS05140 (C4PIVTH_1070) - 1105164..1105886 (+) 723 WP_004260196.1 TorF family putative porin -
  QM552_RS05145 (C4PIVTH_1071) glnK 1105916..1106254 (+) 339 WP_004260191.1 P-II family nitrogen regulator -
  QM552_RS05150 (C4PIVTH_1072) - 1106269..1107600 (+) 1332 WP_004260186.1 ammonium transporter -
  QM552_RS05155 (C4PIVTH_1073) - 1107768..1109189 (-) 1422 WP_004260175.1 aspartate kinase -
  QM552_RS05160 (C4PIVTH_1074) purU 1109313..1110188 (-) 876 WP_004260172.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52915.69 Da        Isoelectric Point: 8.4289

>NTDB_id=1152192 QM552_RS05130 WP_004260207.1 1103034..1104536(-) (comM) [Thauera humireducens strain Piv1]
MSLALVRSRALDGLDAPEVTVEVHLANGLPAFSLVGLPDTEVREARDRVRAALQTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILVASGQVAGRLLDGLEFCGELSLNGELRAVRGVLAVALAAGRARRSLVVATANAPEAALARTATVLPAASL
CAVAAHLNGHTPLPPTVLDNPAAAATACAPDLADVRGQLQARRALEVAAAGAHSLLLFGPPGTGKSMLAQRLPGLLPPML
EHEALETAAVCSLEGSFDASRWAQRPFRSPHHSASAAALVGGGATPRPGEISLAHNGVLYLDELPEFDRRVLESLREPLE
TGHISVSRARRRAEFPARFQLVAAMNPCPCGYAGHPRKPCRCTPEQVARYRGKLSGPLLDRIDLVVEVPVLAHEELATAV
PAPSSADVRARVVQARAQQMERQGDVNARLDSRGVERFCLPDAAGAALLQQAMNRLDLSARAYHRILRVARTLADMAGAA
QPGAAHVAEAIQYRRSLDGR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1152192 QM552_RS05130 WP_004260207.1 1103034..1104536(-) (comM) [Thauera humireducens strain Piv1]
ATGTCGCTTGCACTCGTGCGCAGCCGCGCACTCGATGGTCTCGACGCGCCGGAGGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCGCCTTCAGTCTCGTCGGCCTGCCCGACACCGAGGTACGCGAGGCGCGCGACCGGGTGCGTGCGGCCCTTC
AGACCTCGCAGTTCGAGTTCCCGCAGCGGCGCATCACGGTCAATCTGGCGCCTGCCGATCTGCCGAAGGAGGGCGGGCGC
TTCGATCTGGCGATCGCCGTGGGCATTCTTGTCGCTTCCGGCCAGGTCGCCGGCAGGCTGCTCGACGGGCTGGAGTTCTG
CGGCGAGCTGTCGCTCAATGGCGAGCTGCGCGCGGTGCGCGGCGTGCTTGCCGTGGCGCTGGCCGCAGGGCGTGCGCGGC
GCAGTCTCGTGGTGGCGACGGCCAACGCGCCCGAAGCGGCGCTGGCGCGTACCGCGACCGTGTTGCCGGCGGCCAGCCTG
TGTGCGGTGGCGGCGCACCTCAATGGCCACACGCCGCTGCCGCCGACCGTGCTCGACAATCCGGCCGCTGCCGCCACGGC
GTGCGCGCCCGACCTTGCCGATGTGCGCGGGCAGCTCCAGGCGCGCCGTGCGCTGGAAGTAGCCGCCGCGGGCGCGCACT
CGCTGCTGCTGTTCGGTCCGCCGGGCACGGGCAAGTCCATGCTGGCGCAGCGGCTGCCCGGCCTGCTGCCACCCATGCTC
GAACATGAAGCGCTCGAGACCGCGGCCGTGTGTTCACTCGAAGGCAGTTTCGATGCGTCGCGCTGGGCCCAGCGCCCCTT
CCGCAGTCCGCATCACTCGGCCTCGGCGGCGGCACTGGTGGGCGGCGGGGCGACGCCGCGGCCGGGCGAGATCTCGCTGG
CCCACAACGGGGTGCTCTACCTCGACGAGTTGCCCGAGTTCGACCGCCGTGTGCTCGAATCCCTGCGCGAACCGCTGGAA
ACAGGCCATATCAGCGTCTCGCGCGCCCGCAGACGTGCGGAGTTCCCCGCCCGGTTCCAGTTGGTGGCAGCGATGAATCC
CTGTCCCTGCGGCTATGCGGGACACCCGCGAAAGCCCTGCAGGTGCACGCCCGAACAGGTTGCCCGCTATCGCGGAAAAC
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGGTGGTCGAGGTTCCGGTGCTGGCGCACGAGGAGCTCGCCACGGCGGTC
CCGGCGCCCTCGTCAGCGGACGTGCGGGCGCGCGTGGTGCAGGCGCGGGCGCAGCAGATGGAACGCCAGGGCGACGTGAA
TGCGCGGCTCGACAGCCGCGGTGTGGAACGTTTCTGCCTGCCGGATGCGGCGGGCGCAGCCCTGCTGCAGCAGGCGATGA
ATCGTCTGGATCTCTCGGCGCGCGCCTATCACCGCATCCTGCGGGTGGCGCGCACGCTGGCCGACATGGCAGGTGCCGCG
CAGCCGGGCGCGGCGCATGTGGCGGAGGCGATCCAGTACCGCCGCAGTCTGGACGGTCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127K8J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.839

99.2

0.544
  comM Haemophilus influenzae Rd KW20

54.2

100

0.542
  comM Vibrio campbellii strain DS40M4

54.326

99.4

0.54
  comM Glaesserella parasuis strain SC1401

51.8

100

0.518
  comM Legionella pneumophila str. Paris

48.915

100

0.496
  comM Legionella pneumophila strain ERS1305867

48.915

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.45

Multiple sequence alignment