Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LQ983_RS07655 Genome accession   NZ_OV100759
Coordinates   1585702..1586925 (-) Length   407 a.a.
NCBI ID   WP_230622238.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580702..1591925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS07620 - 1580748..1581473 (-) 726 WP_230622232.1 hypothetical protein -
  LQ983_RS07625 raiA 1581554..1581877 (-) 324 WP_006719151.1 ribosome-associated translation inhibitor RaiA -
  LQ983_RS07630 - 1582111..1583487 (-) 1377 WP_230622233.1 sodium:alanine symporter family protein -
  LQ983_RS07635 - 1583866..1584138 (-) 273 WP_230622234.1 GNAT family N-acetyltransferase -
  LQ983_RS07640 yacG 1584135..1584350 (-) 216 WP_230622235.1 DNA gyrase inhibitor YacG -
  LQ983_RS07645 coaE 1584340..1584963 (-) 624 WP_230622236.1 dephospho-CoA kinase -
  LQ983_RS07650 - 1585013..1585705 (-) 693 WP_230622237.1 A24 family peptidase -
  LQ983_RS07655 pilC 1585702..1586925 (-) 1224 WP_230622238.1 type II secretion system F family protein Machinery gene
  LQ983_RS07660 pilB 1586918..1588327 (-) 1410 WP_230622239.1 GspE/PulE family protein Machinery gene
  LQ983_RS07665 pilA 1588356..1588808 (-) 453 WP_230622240.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LQ983_RS07670 ampD 1588935..1589489 (+) 555 WP_230622241.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LQ983_RS07675 - 1590077..1590622 (+) 546 WP_230622242.1 carboxymuconolactone decarboxylase family protein -
  LQ983_RS07680 - 1590786..1591580 (+) 795 WP_006719133.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 46242.92 Da        Isoelectric Point: 10.5152

>NTDB_id=1151826 LQ983_RS07655 WP_230622238.1 1585702..1586925(-) (pilC) [Aggregatibacter sp. Marseille-P9115]
MTKLKLFRWRAINRLQQKQKGLIVAESEAKARQQLMARGLQSITLQQNWQLSNKPKNAEICALLSQLATLLQAAVPLKHS
LQILLQNCTNIALNQWLRLLLRDIERGLAFSQALEQQGLYLTYQERQLIQVGEMTGKLAAVCHEIAQHKQQTLALQRKIQ
KILLYPVLVLGISLILTVLLLLFIVPQFAAMYDNNSAQLPAFTQLLLTLSQGLQNYWLALLIVVVLTVILIRFQLKHSPW
LHRQKTRLFNNMPLLNHIVRLSRLVSFSRSLFLMLQAGVPLNQALQSFLPKQQSWQTKPQLQGDLILMTEVQSALHWIQQ
GYPFSASVSGQIFPPAAQQMLQVGEQSGELPKMLQFIANDHQQQLDHQIDLLSQMLEPLLMVIIGGLIGLIMLGMYLPIF
NMGSLVQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1151826 LQ983_RS07655 WP_230622238.1 1585702..1586925(-) (pilC) [Aggregatibacter sp. Marseille-P9115]
ATGACTAAATTAAAATTATTTCGCTGGCGAGCGATCAATCGGTTACAACAAAAACAAAAAGGACTCATTGTAGCAGAAAG
CGAAGCAAAGGCACGGCAGCAGTTAATGGCGCGAGGTTTGCAAAGCATTACATTGCAACAAAACTGGCAACTGAGCAATA
AGCCGAAAAATGCCGAGATCTGCGCCTTACTTTCACAGCTCGCGACATTATTACAAGCCGCGGTCCCCTTAAAACATAGT
CTGCAAATTCTGTTGCAAAACTGCACCAATATCGCACTGAATCAATGGCTCCGTCTCTTATTACGAGACATTGAAAGGGG
TTTAGCCTTTTCTCAAGCCTTAGAACAGCAAGGGTTATACCTCACCTATCAAGAACGCCAACTTATTCAAGTAGGTGAAA
TGACCGGCAAACTTGCTGCGGTTTGTCATGAAATAGCCCAACACAAACAACAAACACTGGCGTTGCAGCGTAAAATACAA
AAGATCTTGCTTTACCCTGTGTTGGTACTGGGTATTTCATTAATATTGACCGTCCTGCTATTGTTATTCATCGTGCCACA
ATTTGCGGCGATGTATGACAACAACAGCGCACAACTCCCCGCCTTTACACAACTTCTACTTACGCTCTCTCAAGGGTTAC
AAAATTATTGGTTGGCTCTACTCATCGTTGTTGTACTCACCGTCATACTCATTCGCTTTCAGCTGAAACACTCGCCCTGG
CTTCATCGACAAAAAACACGTTTGTTCAACAACATGCCGCTGCTTAATCATATCGTTCGGCTTTCCCGTTTGGTGAGCTT
CAGCCGCAGTTTATTTTTGATGTTACAGGCTGGCGTTCCACTAAATCAGGCACTTCAATCTTTCCTACCGAAACAACAAA
GCTGGCAAACCAAACCTCAATTACAAGGCGATTTAATATTAATGACGGAAGTGCAATCGGCACTCCATTGGATTCAACAA
GGCTATCCGTTTTCCGCCAGCGTGAGTGGACAAATTTTTCCCCCTGCAGCCCAACAAATGCTACAAGTAGGAGAACAAAG
TGGAGAATTGCCCAAGATGCTGCAATTTATCGCCAACGATCATCAACAACAGCTAGATCATCAAATTGATCTCCTGTCAC
AAATGCTTGAACCTTTATTAATGGTGATTATCGGCGGACTTATCGGTTTAATTATGCTCGGCATGTACCTACCGATTTTC
AACATGGGTTCGCTAGTACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-398)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

62.408

100

0.624
  pilC Haemophilus influenzae 86-028NP

61.916

100

0.619
  pilC Glaesserella parasuis strain SC1401

39.558

100

0.396

Multiple sequence alignment