Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LQ983_RS07665 Genome accession   NZ_OV100759
Coordinates   1588356..1588808 (-) Length   150 a.a.
NCBI ID   WP_230622240.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583356..1593808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS07635 - 1583866..1584138 (-) 273 WP_230622234.1 GNAT family N-acetyltransferase -
  LQ983_RS07640 yacG 1584135..1584350 (-) 216 WP_230622235.1 DNA gyrase inhibitor YacG -
  LQ983_RS07645 coaE 1584340..1584963 (-) 624 WP_230622236.1 dephospho-CoA kinase -
  LQ983_RS07650 - 1585013..1585705 (-) 693 WP_230622237.1 A24 family peptidase -
  LQ983_RS07655 pilC 1585702..1586925 (-) 1224 WP_230622238.1 type II secretion system F family protein Machinery gene
  LQ983_RS07660 pilB 1586918..1588327 (-) 1410 WP_230622239.1 GspE/PulE family protein Machinery gene
  LQ983_RS07665 pilA 1588356..1588808 (-) 453 WP_230622240.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LQ983_RS07670 ampD 1588935..1589489 (+) 555 WP_230622241.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LQ983_RS07675 - 1590077..1590622 (+) 546 WP_230622242.1 carboxymuconolactone decarboxylase family protein -
  LQ983_RS07680 - 1590786..1591580 (+) 795 WP_006719133.1 formate/nitrite transporter family protein -
  LQ983_RS07685 nanQ 1591677..1592147 (-) 471 WP_230622243.1 N-acetylneuraminate anomerase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15622.98 Da        Isoelectric Point: 8.8087

>NTDB_id=1151828 LQ983_RS07665 WP_230622240.1 1588356..1588808(-) (pilA) [Aggregatibacter sp. Marseille-P9115]
MTIQSVFISLKSVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAISELLQASAPLRAEVELCIYNTGKTDNCSGGQ
NGIQADVTDATKQKYVKSTKVKSGAITVTGKSSLENISYTLSASGTAATGVSWAASCGNNAEIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1151828 LQ983_RS07665 WP_230622240.1 1588356..1588808(-) (pilA) [Aggregatibacter sp. Marseille-P9115]
ATGACAATTCAATCCGTTTTTATCTCTCTGAAATCCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATTGTGATTGC
GATCGTCGCGATTCTCGCCACTGTCGCGGTGCCATCTTACCAAAATTACACCAAAAAAGCGGCTATTTCCGAGTTGTTAC
AGGCTTCTGCGCCGCTTCGCGCCGAAGTGGAACTGTGTATTTACAACACCGGCAAAACCGATAACTGCAGCGGAGGACAA
AACGGCATTCAAGCAGACGTTACCGATGCCACAAAACAAAAATACGTAAAATCCACCAAAGTGAAAAGTGGCGCTATCAC
TGTAACCGGGAAAAGCAGTCTCGAAAATATTAGCTACACCCTCAGTGCCTCCGGCACCGCTGCCACGGGGGTAAGCTGGG
CGGCTTCCTGCGGTAATAATGCAGAAATTTTCCCGGCGGGCTTTTGCTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

64.286

93.333

0.6
  pilA Haemophilus influenzae Rd KW20

60.417

96

0.58
  pilA Glaesserella parasuis strain SC1401

52.448

95.333

0.5

Multiple sequence alignment