Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | LQ983_RS07330 | Genome accession | NZ_OV100759 |
| Coordinates | 1523776..1524105 (-) | Length | 109 a.a. |
| NCBI ID | WP_230622203.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. Marseille-P9115 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1518776..1529105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ983_RS07300 | - | 1518805..1519446 (+) | 642 | WP_230622198.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LQ983_RS07305 | serA | 1519519..1520751 (-) | 1233 | WP_006719269.1 | phosphoglycerate dehydrogenase | - |
| LQ983_RS07310 | rpiA | 1520770..1521426 (-) | 657 | WP_230622199.1 | ribose-5-phosphate isomerase RpiA | - |
| LQ983_RS07315 | hemW | 1521522..1522691 (-) | 1170 | WP_230622200.1 | radical SAM family heme chaperone HemW | - |
| LQ983_RS07320 | - | 1522691..1523014 (-) | 324 | WP_230622201.1 | YbjQ family protein | - |
| LQ983_RS07325 | rdgB | 1523054..1523653 (-) | 600 | WP_230622202.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| LQ983_RS07330 | comE1/comEA | 1523776..1524105 (-) | 330 | WP_230622203.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| LQ983_RS07335 | glpE | 1524496..1524822 (+) | 327 | WP_230622204.1 | thiosulfate sulfurtransferase GlpE | - |
| LQ983_RS07340 | - | 1524819..1525133 (-) | 315 | WP_230622205.1 | DUF5389 domain-containing protein | - |
| LQ983_RS07345 | - | 1525175..1526050 (+) | 876 | WP_230622206.1 | rhomboid family intramembrane serine protease | - |
| LQ983_RS07350 | - | 1526115..1526870 (+) | 756 | WP_048749311.1 | DeoR/GlpR family transcriptional regulator | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11431.28 Da Isoelectric Point: 10.0532
>NTDB_id=1151825 LQ983_RS07330 WP_230622203.1 1523776..1524105(-) (comE1/comEA) [Aggregatibacter sp. Marseille-P9115]
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPAAQTEQPAATAAVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIAL
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPAAQTEQPAATAAVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIAL
Nucleotide
Download Length: 330 bp
>NTDB_id=1151825 LQ983_RS07330 WP_230622203.1 1523776..1524105(-) (comE1/comEA) [Aggregatibacter sp. Marseille-P9115]
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACAGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAGCACAAACAGAGCAACCCGCCGCAACGGCCGCTGTTAGCCAGAAAGTCAACATCAACACGGCCT
CTGCTGCCGAAATTCAAAAAGCGCTTGTGGGTATTGGCGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGCGCTATCGAGCAATTATTAGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTGTAA
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACAGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAGCACAAACAGAGCAACCCGCCGCAACGGCCGCTGTTAGCCAGAAAGTCAACATCAACACGGCCT
CTGCTGCCGAAATTCAAAAAGCGCTTGTGGGTATTGGCGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGCGCTATCGAGCAATTATTAGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.909 |
100 |
0.615 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.097 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
42.453 |
97.248 |
0.413 |
| comEA | Vibrio cholerae strain A1552 |
42.453 |
97.248 |
0.413 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.453 |
97.248 |
0.413 |