Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSO75_RS03930 Genome accession   NZ_OV040584
Coordinates   763275..763781 (-) Length   168 a.a.
NCBI ID   WP_044332305.1    Uniprot ID   A0AAJ8WBM4
Organism   Haemophilus influenzae isolate KR271     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 758275..768781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO75_RS03895 (KRLU271_LOCUS731) hpf 758507..758830 (-) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LSO75_RS03900 (KRLU271_LOCUS732) bamC 759003..759650 (-) 648 WP_061827724.1 outer membrane protein assembly factor BamC -
  LSO75_RS03905 (KRLU271_LOCUS733) dapA 759761..760657 (-) 897 WP_005648859.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LSO75_RS03910 (KRLU271_LOCUS734) bcp 760758..761225 (+) 468 WP_046067566.1 thioredoxin-dependent thiol peroxidase -
  LSO75_RS03915 (KRLU271_LOCUS735) exbB 761394..761846 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  LSO75_RS03920 (KRLU271_LOCUS736) exbD 761850..762293 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  LSO75_RS03925 (KRLU271_LOCUS737) - 762303..763097 (+) 795 WP_044364903.1 energy transducer TonB -
  LSO75_RS03930 (KRLU271_LOCUS738) ssb 763275..763781 (-) 507 WP_044332305.1 single-stranded DNA-binding protein Machinery gene
  LSO75_RS03935 (KRLU271_LOCUS739) uvrA 763936..766767 (+) 2832 WP_044364905.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18781.60 Da        Isoelectric Point: 5.2649

>NTDB_id=1151744 LSO75_RS03930 WP_044332305.1 763275..763781(-) (ssb) [Haemophilus influenzae isolate KR271]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGVPQSSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1151744 LSO75_RS03930 WP_044332305.1 763275..763781(-) (ssb) [Haemophilus influenzae isolate KR271]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGCGGTGTGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

54.945

100

0.595
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363

Multiple sequence alignment