Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   X875_RS01555 Genome accession   NZ_CP006953
Coordinates   315617..315946 (-) Length   109 a.a.
NCBI ID   WP_025218024.1    Uniprot ID   -
Organism   Mannheimia varigena USDA-ARS-USMARC-1388     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310617..320946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X875_RS01540 (X875_2990) manX 310826..311803 (-) 978 WP_025342172.1 PTS mannose transporter subunit IIAB -
  X875_RS01545 (X875_3000) gshAB 312125..314401 (-) 2277 WP_025342173.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  X875_RS01550 (X875_3010) asd 314565..315455 (-) 891 WP_025342174.1 archaetidylserine decarboxylase -
  X875_RS01555 (X875_3030) comEA/comE1 315617..315946 (-) 330 WP_025218024.1 ComEA family DNA-binding protein Machinery gene
  X875_RS01560 (X875_3040) - 316235..317587 (+) 1353 WP_025342175.1 LysM-like peptidoglycan-binding domain-containing protein -
  X875_RS01565 (X875_3050) - 317646..318065 (+) 420 WP_025218022.1 MliC family protein -
  X875_RS01570 (X875_3060) waaF 318100..319137 (+) 1038 WP_025342176.1 lipopolysaccharide heptosyltransferase II -
  X875_RS01575 (X875_3070) rfaC 319208..320167 (+) 960 WP_025342177.1 lipopolysaccharide heptosyltransferase RfaC -
  X875_RS01580 (X875_3080) rpsL 320287..320661 (+) 375 WP_005708967.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11876.55 Da        Isoelectric Point: 6.3012

>NTDB_id=115164 X875_RS01555 WP_025218024.1 315617..315946(-) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1388]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNAVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=115164 X875_RS01555 WP_025218024.1 315617..315946(-) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1388]
ATGAAACAAATGAAAACTCTCGCGTTAGGTCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAATGCCGTAAACATCAACACCGCAAGTG
CTGCTGAGTTACAAGATAAACTAGTAGGTATTGGCGAGAAAAAAGCTCAAGCAATTGTCGATTACCGTACCAAAAATGGG
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGGCAAGCAACAGTAGAAAAAAATCGAGCAAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.55
  comE1/comEA Haemophilus influenzae Rd KW20

47.321

100

0.486
  comEA Vibrio campbellii strain DS40M4

39.815

99.083

0.394
  comEA Vibrio cholerae C6706

64.516

56.881

0.367
  comEA Vibrio cholerae strain A1552

64.516

56.881

0.367

Multiple sequence alignment