Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG374_RS09995 Genome accession   NZ_OU745373
Coordinates   2088733..2089326 (+) Length   197 a.a.
NCBI ID   WP_225757553.1    Uniprot ID   -
Organism   Cardiobacterium sp. Marseille-Q4385     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2083733..2094326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG374_RS09960 - 2084966..2085238 (-) 273 WP_225757546.1 hypothetical protein -
  LG374_RS09965 nth 2085238..2085870 (-) 633 WP_225757547.1 endonuclease III -
  LG374_RS09970 - 2085904..2086149 (-) 246 WP_225757548.1 recombinase RecA -
  LG374_RS09975 - 2086149..2086931 (-) 783 WP_225757549.1 TatD family hydrolase -
  LG374_RS09980 - 2086928..2087116 (-) 189 WP_225757550.1 hypothetical protein -
  LG374_RS09985 - 2087209..2087550 (+) 342 WP_225757551.1 hypothetical protein -
  LG374_RS09990 - 2087553..2088704 (+) 1152 WP_225757552.1 MFS transporter -
  LG374_RS09995 ssb 2088733..2089326 (+) 594 WP_225757553.1 single-stranded DNA-binding protein Machinery gene
  LG374_RS10000 - 2089525..2090199 (+) 675 WP_225757554.1 HAD family hydrolase -
  LG374_RS10010 - 2090734..2090892 (+) 159 WP_225757555.1 hypothetical protein -
  LG374_RS10015 ilvB 2090908..2092674 (+) 1767 WP_225757556.1 biosynthetic-type acetolactate synthase large subunit -
  LG374_RS10020 ilvN 2092671..2093177 (+) 507 WP_225757557.1 acetolactate synthase small subunit -
  LG374_RS10025 - 2093196..2093615 (+) 420 WP_225757558.1 hypothetical protein -
  LG374_RS10030 - 2093646..2093990 (+) 345 WP_225757559.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21591.41 Da        Isoelectric Point: 4.7236

>NTDB_id=1151542 LG374_RS09995 WP_225757553.1 2088733..2089326(+) (ssb) [Cardiobacterium sp. Marseille-Q4385]
MAGVNKVIIIGNLGNDPDMRYMPSGEAVANLSIATSETWTDRNTGEKREKTEWHRVVAFRKLAEIIGQYCKKGSKIYIEG
KLQTRKWTDQSGQNRYTTEIIADEMQMLDSRGSGGGDWGNNQGQDYGNRGQGGYNNANRGGGYGNQGDDYGYNDYGNSGG
GNQRNSMPNKPVPPQNDNGGFGGPTLDQDTFDDDIPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1151542 LG374_RS09995 WP_225757553.1 2088733..2089326(+) (ssb) [Cardiobacterium sp. Marseille-Q4385]
ATGGCAGGCGTCAACAAAGTCATCATCATCGGAAACCTCGGCAACGACCCGGATATGCGTTACATGCCCAGCGGCGAAGC
CGTAGCGAACCTCTCCATCGCGACCTCAGAAACCTGGACCGACCGCAACACCGGCGAAAAACGCGAAAAAACCGAATGGC
ACCGCGTCGTCGCCTTCCGCAAACTGGCGGAAATCATCGGCCAGTACTGCAAAAAAGGCAGCAAAATCTACATCGAAGGC
AAACTGCAAACCCGCAAATGGACCGACCAGAGCGGACAAAACCGCTACACCACCGAAATCATCGCTGACGAAATGCAAAT
GCTCGACAGCCGTGGCAGCGGTGGCGGCGACTGGGGCAACAACCAGGGGCAAGACTACGGTAACCGTGGCCAGGGCGGCT
ACAACAACGCTAACCGTGGCGGCGGCTACGGCAACCAGGGCGACGACTACGGCTATAACGACTATGGCAACAGCGGCGGT
GGCAATCAGCGCAACAGCATGCCGAACAAACCTGTCCCCCCGCAAAACGACAACGGCGGCTTCGGCGGCCCGACGCTTGA
TCAAGACACCTTCGACGACGACATACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

57.576

100

0.579
  ssb Vibrio cholerae strain A1552

48.241

100

0.487
  ssb Neisseria meningitidis MC58

42.051

98.985

0.416
  ssb Neisseria gonorrhoeae MS11

42.051

98.985

0.416

Multiple sequence alignment